GenoSiS: A Biobank-Scale Genotype Similarity Search Architecture for Creating Dynamic Patient-Match Cohorts. Journal Article uri icon

Overview

abstract

  • Many patients do not experience optimal benefits from medical advances because clinical research does not adequately represent them. While the diversity of biomedical research cohorts is improving, ensuring that individual patients are adequately represented remains challenging. We propose a new approach, GenoSiS, which leverages machine learning-based similarity search to dynamically find patient-matched cohorts across different populations quickly. These cohorts could serve as reference cohorts to improve a range of clinical analyses, including disease risk score calculations and dosage decisions. While GenoSiS focuses on finding genetic similarity within a biobank, our similarity search architecture can be extended to represent other medically relevant patient characteristics and search other biobanks.

publication date

  • November 3, 2024

has restriction

  • green

Date in CU Experts

  • November 30, 2024 2:07 AM

Full Author List

  • Schneider K; Chowdhury M; Tepper M; Khan J; Colorado Center for Personalized Medicine; Shortt JA; Gignoux C; Layer R

author count

  • 8

Other Profiles

Electronic International Standard Serial Number (EISSN)

  • 2692-8205