selected publications

• journal article

  • Estimation of spatial demographic maps from polymorphism data using a neural network..  Molecular Ecology Resources. e14005. 2024
  • Gene expression and alternative splicing contribute to adaptive divergence of ecotypes.  Heredity. 120-132. 2024
  • disperseNN2: a neural network for estimating dispersal distance from georeferenced polymorphism data.  BMC Bioinformatics. 2023
  • Machine learning speeds up genetic structure analysis..  Nature Computational Science. 580-581. 2023
  • Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations.  eLife. 2023
  • Dispersal inference from population genetic variation using a convolutional neural network..  Genetics: a periodical record of investigations bearing on heredity and variation. 2023
  • A migratory divide spanning two continents is associated with genomic and ecological divergence.  Evolution. 722-736. 2022
  • Aberrant RNA splicing due to genetic incompatibilities in sunflower hybrids.  Evolution. 2747-2758. 2021
  • Sex-linked genetic diversity and differentiation in a globally distributed avian species complex.  Molecular Ecology. 2313-2332. 2021
  • The gut microbiota response to helminth infection depends on host sex and genotype.  The ISME Journal: multidisciplinary journal of microbial ecology. 1141-1153. 2020
  • Migratory divides coincide with reproductive barriers across replicated avian hybrid zones above the Tibetan Plateau.  Ecology Letters. 231-241. 2020
  • Leveraging whole genome sequencing data for demographic inference with approximate Bayesian computation.  Molecular Ecology Resources. 125-139. 2020
  • Unifying Theoretical and Empirical Perspectives on Genomic Differentiation.  Trends in Ecology and Evolution. 987-995. 2019
  • Book Review: Molecular Population Genetics. Matthew Hahn..  Molecular Ecology. 2018
  • Demographic inference in barn swallows using whole-genome data shows signal for bottleneck and subspecies differentiation during the Holocene.  Molecular Ecology. 4200-4212. 2018
  • Genetics of alternative splicing evolution during sunflower domestication.  Proceedings of the National Academy of Sciences of USA. 6768-6773. 2018
  • Effects of assortative mate choice on the genomic and morphological structure of a hybrid zone between two bird subspecies.  Molecular Ecology. 6430-6444. 2017
  • Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota.  The ISME Journal: multidisciplinary journal of microbial ecology. 2515-2526. 2015
  • Wolbachiado not live by reproductive manipulation alone: infection polymorphism inDrosophila suzukiiandD. subpulchrella.  Molecular Ecology. 4871-4885. 2014