publication venue for
- scHolography: a computational method for single-cell spatial neighborhood reconstruction and analysis 2024
- Samplot: a platform for structural variant visual validation and automated filtering 2021
- The Tug1 lncRNA locus is essential for male fertility 2020
- Cis and trans effects differentially contribute to the evolution of promoters and enhancers 2020
- Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny 2019
- Systematic evaluation of C-elegans lincRNAs with CRISPR knockout mutants 2019
- Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate 2018
- Enhancers in the Peril lincRNA locus regulate distant but not local genes 2018
- Vcfanno: fast, flexible annotation of genetic variants 2016
- Tiny microbes, enormous impacts: what matters in gut microbiome studies? 2016
- Widespread RNA binding by chromatin-associated proteins 2016
- A novel two-step genome editing strategy with CRISPR-Cas9 provides new insights into telomerase action and TERT gene expression 2015
- Localization and abundance analysis of human IncRNAs at single-cell and single-molecule resolution 2015
- LUMPY: a probabilistic framework for structural variant discovery 2014
- 'Oming in on RNA-protein interactions 2014
- RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome 2014
- Temporal variability is a personalized feature of the human microbiome 2014
- Tracking down the sources of experimental contamination in microbiome studies 2014
- Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactions 2014
- Pint lincRNA connects the p53 pathway with epigenetic silencing by the Polycomb repressive complex 2 2013
- High-efficiency RNA cloning enables accurate quantification of miRNA expression by deep sequencing 2013
- Sixty years of genome biology 2013
- Transposable elements reveal a stem cell-specific class of long noncoding RNAs 2012
- A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs 2011
- Genomics in 2011: challenges and opportunities 2011
- Improving RNA-Seq expression estimates by correcting for fragment bias 2011
- Moving pictures of the human microbiome 2011
- The similarity of gene expression between human and mouse tissues 2011
- Direct sequencing of the human microbiome readily reveals community differences 2010
- Genome-wide insights into eukaryotic transcriptional control. 2010
- Mining data from 1000 genomes to identify the causal variant in regions under positive selection 2010
- MotifCluster: an interactive online tool for clustering and visualizing sequences using shared motifs 2008
- Susceptibility to glaucoma: differential comparison of the astrocyte transcriptome from glaucomatous African American and Caucasian American donors 2008
- Cross-species cluster co-conservation: a new method for generating protein interaction networks 2007
- Unraveling transcriptional control and cis-regulatory codes using the software suite GeneACT 2006
- Global expression changes resulting from loss of telomeric DNA in fission yeast 2005
- Lateral gene transfer and parallel evolution in the history of glutathione biosynthesis genes 2002
- Comparative analysis of the vaginal microbiome in health and disease 2011