Genome Biology Journal

Overview

publication venue for

• TF Profiler: a transcription factor inference method that broadly measures transcription factor activity and identifies mechanistically distinct networks 2025
• scHolography: a computational method for single-cell spatial neighborhood reconstruction and analysis 2024
• Samplot: a platform for structural variant visual validation and automated filtering 2021
• The Tug1 lncRNA locus is essential for male fertility 2020
• Cis and trans effects differentially contribute to the evolution of promoters and enhancers 2020
Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny 2019
Systematic evaluation of C-elegans lincRNAs with CRISPR knockout mutants 2019
Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate 2018
Enhancers in the Peril lincRNA locus regulate distant but not local genes 2018
Vcfanno: fast, flexible annotation of genetic variants 2016
Tiny microbes, enormous impacts: what matters in gut microbiome studies? 2016
Widespread RNA binding by chromatin-associated proteins 2016
A novel two-step genome editing strategy with CRISPR-Cas9 provides new insights into telomerase action and TERT gene expression 2015
Localization and abundance analysis of human IncRNAs at single-cell and single-molecule resolution 2015
LUMPY: a probabilistic framework for structural variant discovery 2014
'Oming in on RNA-protein interactions 2014
RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome 2014
Temporal variability is a personalized feature of the human microbiome 2014
Tracking down the sources of experimental contamination in microbiome studies 2014
Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactions 2014
Pint lincRNA connects the p53 pathway with epigenetic silencing by the Polycomb repressive complex 2 2013
High-efficiency RNA cloning enables accurate quantification of miRNA expression by deep sequencing 2013
Sixty years of genome biology 2013
Transposable elements reveal a stem cell-specific class of long noncoding RNAs 2012
A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs 2011
Genomics in 2011: challenges and opportunities 2011
Improving RNA-Seq expression estimates by correcting for fragment bias 2011
Moving pictures of the human microbiome 2011
The similarity of gene expression between human and mouse tissues 2011
Direct sequencing of the human microbiome readily reveals community differences 2010
Genome-wide insights into eukaryotic transcriptional control. 2010
Mining data from 1000 genomes to identify the causal variant in regions under positive selection 2010
MotifCluster: an interactive online tool for clustering and visualizing sequences using shared motifs 2008
Susceptibility to glaucoma: differential comparison of the astrocyte transcriptome from glaucomatous African American and Caucasian American donors 2008
Cross-species cluster co-conservation: a new method for generating protein interaction networks 2007
Unraveling transcriptional control and cis-regulatory codes using the software suite GeneACT 2006
Global expression changes resulting from loss of telomeric DNA in fission yeast 2005
Lateral gene transfer and parallel evolution in the history of glutathione biosynthesis genes 2002
Comparative analysis of the vaginal microbiome in health and disease 2011
... more

Research

keywords

• 05 Environmental Sciences, 06 Biological Sciences, 08 Information and Computing Sciences