publication venue for

• Enhancing untargeted metabolomics using metadata-based source annotation 2023
• Enhancing untargeted metabolomics using metadata-based source annotation 2022
• Rapid biosensor development using plant hormone receptors as reprogrammable scaffolds 2022
• Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. 2019
• Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. 2019
• Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea 2017
• Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering 2017
• A comparison of genetically matched cell lines reveals the equivalence of human iPSCs and ESCs 2015
• Lineage conversion induced by pluripotency factors involves transient passage through an iPSC stage 2015
• Multiplexed tracking of combinatorial genomic mutations in engineered cell populations 2015
• The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology 2014
• The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells 2014
• Differential analysis of gene regulation at transcript resolution with RNA-seq 2013
• The sweet allure of XNA 2012
• Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing 2012
• Unlocking the potential of metagenomics through replicated experimental design 2012
• Targeted RNA sequencing reveals the deep complexity of the human transcriptome 2012
• Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications 2011
• Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs (vol 28, pg 503, 2010) 2010
• Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs 2010
• Protein microarrays with carbon nanotubes as multicolor Raman labels 2008
• Human Proteinpedia enables sharing of human protein data 2008
• High-resolution computational models of genome binding events (vol 24, pg 963, 2006) 2006
• High-resolution computational models of genome binding events 2006
• Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein 2004
• Monitoring post-translational modification of proteins with allosteric ribozymes 2002
• RNA as the catalyst for drug screening - Reporter ribozymes that allow monitoring of protein-nucleic acid and protein-protein interactions facilitate rapid identification of inhibitors for use in drug discovery. 2002
• Toward the phosphoproteome 2001
• Job compensation in the biotechnology core laboratory 2000
• Photopolymerizable degradable polyanhydrides with osteocompatibility 1999
• Drug discovery - Keeping pace with genomics through combinatorial chemistry 1997
• Reflections on mirrors 1996