Bioinformatics Journal

Overview

publication venue for

• Ligand identification in CryoEM and X-ray maps using deep learning 2025
• Novel approach for parallelizing pairwise comparison problems as applied to detecting segments identical by decent in whole-genome data 2021
• svtools: population-scale analysis of structural variation 2019
• A generative model for the behavior of RNA polymerase 2017
• GeneEvolve: a fast and memory efficient forward-time simulator of realistic whole-genome sequence and SNP data 2017
JSBML 1.0: providing a smorgasbord of options to encode systems biology models 2015
Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data 2013
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit 2013
Binary Interval Search: a scalable algorithm for counting interval intersections 2013
SitePainter: a tool for exploring biogeographical patterns 2012
PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers 2011
iBioSim: a tool for the analysis and design of genetic circuits 2009
THESEUS: maximum likelihood superpositioning and analysis of macromolecular structures 2006
ConFind: a robust tool for conserved sequence identification 2005
Detecting putative orthologs 2003
... more

Research

keywords

• 01 Mathematical Sciences, 06 Biological Sciences, 08 Information and Computing Sciences