selected publications
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journal article
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Learning representations of microbe-metabolite interactions..
Nature Methods.
2019
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Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2..
Nature Biotechnology.
1091.
2019
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2..
Nature Biotechnology.
852-857.
2019
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Is there convergence of gut microbes in blood-feeding vertebrates?.
Philosophical Transactions B: Biological Sciences.
2019
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Major shifts in gut microbiota during development and its relationship to growth in ostriches.
Molecular Ecology.
2653-2667.
2019
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Engineering the microbiome for animal health and conservation.
Proceedings of the Society for Experimental Biology and Medicine.
494-504.
2019
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Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes.
ISME Journal.
576-587.
2019
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American Gut: an Open Platform for Citizen Science Microbiome Research.
mSystems.
2018
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Evaluating the impact of domestication and captivity on the horse gut microbiome.
Scientific Reports.
2017
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Balance Trees Reveal Microbial Niche Differentiation.
mSystems.
2017
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The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat.
mSystems.
2016
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Using the gut microbiota as a novel tool for examining colobine primate GI health.
Global Ecology and Conservation.
225-237.
2016
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Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies.
mSystems.
2016
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The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions..
mBio.
e02164-e02115.
2016
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From Sample to Multi-Omics Conclusions in under 48 Hours.
mSystems.
2016
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Walls talk: Microbial biogeography of homes spanning urbanization.
Science Advances.
2016
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Characterizing microbial communities through space and time.
Current Opinion in Biotechnology.
431-436.
2012
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From superspreaders to disease hotspots: linking transmission across hosts and space.
Frontiers in Ecology and the Environment.
75-82.
2012
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Our microbial selves: what ecology can teach us.
EMBO Reports.
775-784.
2011
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Learning representations of microbe-metabolite interactions..
Nature Methods.
2019