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• A functional genetic screen reveals sequence preferences within a key tertiary interaction in cobalamin riboswitches required for ligand selectivity  Journal Article
• Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs  Journal Article
• Allele-specific differences in transcriptome, miRNome, and mitochondrial function in two hypertrophic cardiomyopathy mouse models  Journal Article
• An Annotation Agnostic Algorithm for Detecting Nascent RNA Transcripts in GRO-Seq  Journal Article
• Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model  Journal Article
• Bacterial Communities Associated with the Lichen Symbiosis  Journal Article
• Comparative Transcriptomics Among Four White Pine Species  Journal Article
• Decreases in average bacterial community rRNA operon copy number during succession  Journal Article
• Differential analysis of gene regulation at transcript resolution with RNA-seq  Journal Article
• Distinct brain transcriptome profiles in C9orf72-associated and sporadic ALS  Journal Article
• Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints  Journal Article
• Generation and Analysis of a Mouse Intestinal Metatranscriptome through Illumina Based RNA-Sequencing  Journal Article
• Genome-wide analysis of Musashi-2 targets reveals novel functions in governing epithelial cell migration  Journal Article
• Global analysis of mRNA decay intermediates in Saccharomyces cerevisiae  Journal Article
• Gut Microbiome of Coexisting BaAka Pygmies and Bantu Reflects Gradients of Traditional Subsistence Patterns  Journal Article
• Heliconius Butterflies Host Characteristic and Phylogenetically Structured Adult-Stage Microbiomes  Journal Article
• High-throughput identification of RNA nuclear enrichment sequences  Journal Article
• Highly Efficient Ligation of Small RNA Molecules for MicroRNA Quantitation by High-Throughput Sequencing  Journal Article
• Improving RNA-Seq expression estimates by correcting for fragment bias  Journal Article
• In Crystallo Selection to Establish New RNA Crystal Contacts  Journal Article
• In vitro selection of RNAs with increased tertiary structure stability  Journal Article
• Isolation of mammalian stress granule cores for RNA-Seq analysis  Journal Article
• Mesenchymal and MAPK Expression Signatures Associate with Telomerase Promoter Mutations in Multiple Cancers  Journal Article
• Microbial Nursery Production of High-Quality Biological Soil Crust Biomass for Restoration of Degraded Dryland Soils  Journal Article
• Microbial diversity in chronic open wounds  Journal Article
• Microbiome complexity and Staphylococcus aureus in chronic rhinosinusitis  Journal Article
• Model based heritability scores for high-throughput sequencing data  Journal Article
• Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming  Journal Article
• QIIME allows analysis of high-throughput community sequencing data  Journal Article
• RECOGNITION OF THE MESSENGER-RNA SELENOCYSTEINE INSERTION-SEQUENCE BY THE SPECIALIZED TRANSLATIONAL ELONGATION-FACTOR SELB  Journal Article
• RNA-Seq Analysis of Allele-Specific Expression, Hybrid Effects, and Regulatory Divergence in Hybrids Compared with Their Parents from Natural Populations  Journal Article
• RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome  Journal Article
• Repetitive element transcripts are elevated in the brain of C9orf72 ALS/FTLD patients  Journal Article
• Signaling Networks among Stem Cell Precursors, Transit-Amplifying Progenitors, and their Niche in Developing Hair Follicles  Journal Article
• Spatial structuring of bacterial communities within individual Ginkgo biloba trees  Journal Article
• Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA  Journal Article
• Survey of cryptic unstable transcripts in yeast  Journal Article
• Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2  Journal Article
• Targeted RNA sequencing reveals the deep complexity of the human transcriptome  Journal Article
• The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster  Journal Article
• The Reality of Pervasive Transcription  Journal Article
• The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves  Journal Article
• Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre  Journal Article
• Transcriptome analysis of Inbred Long Sleep and Inbred Short Sleep mice  Journal Article
• Transcriptome analysis of genetically matched human induced pluripotent stem cells disomic or trisomic for chromosome 21  Journal Article
• Transcriptome and Functional Profile of Cardiac Myocytes Is Influenced by Biological Sex  Journal Article
• miR-MaGiC improves quantification accuracy for small RNA-seq.  Journal Article