Biology - Computational Biology PubMed MeSh Term

Overview

subject area of

• Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs  Journal Article
• A Modeling Framework for Generation of Positional and Temporal Simulations of Transcriptional Regulation  Journal Article
• A Network Approach to Analyzing Highly Recombinant Malaria Parasite Genes  Journal Article
• A Peptide Antagonist of the TLR4-MD2 Interaction  Journal Article
• A comparison of genetically matched cell lines reveals the equivalence of human iPSCs and ESCs  Journal Article
• A method of mapping protein sumoylation sites by mass spectrometry using a modified small ubiquitin-like modifier 1 (SUMO-1) and a computational program  Journal Article
• A skin microRNA promotes differentiation by repressing 'stemness'  Journal Article
• Advancing Our Understanding of the Human Microbiome Using QIIME  Journal Article
• Alchemical free energy methods for drug discovery: progress and challenges  Journal Article
• An Annotation Agnostic Algorithm for Detecting Nascent RNA Transcripts in GRO-Seq  Journal Article
• Application of a bioinformatic pipeline to RNA-seq data identifies novel virus-like sequence in human blood  Journal Article
• Applying knowledge-driven mechanistic inference to toxicogenomics  Conference Proceeding
• Bayesian community-wide culture-independent microbial source tracking  Journal Article
• Behavior change interventions: the potential of ontologies for advancing science and practice  Journal Article
• Bioinformatics Analysis to Identify RNA-Protein Interactions in Oogenesis.  Journal Article
• Bioinformatics assessment of β-myosin mutations reveals myosin's high sensitivity to mutations  Journal Article
• Botany without borders: barcoding in focus  Journal Article
• Cell biology - Lessons in rational drug design for protein kinases  Journal Article
• Coevolution of gene expression among interacting proteins  Journal Article
• Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats  Journal Article
• Comparison of methods for estimating the nucleotide substitution matrix  Journal Article
• Computational analysis of noncoding RNAs  Journal Article
• Computational and Functional Analysis of the Virus-Receptor Interface Reveals Host Range Trade-Offs in New World Arenaviruses  Journal Article
• ConFind: a robust tool for conserved sequence identification  Journal Article
• Contribution of rare variants to traits  Journal Article
• Cross-species cluster co-conservation: a new method for generating protein interaction networks  Journal Article
• Design and analysis of a robust genetic Muller C-element  Journal Article
• Detecting autozygosity through runs of homozygosity: A comparison of three autozygosity detection algorithms  Journal Article
• Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides  Journal Article
• Disentangling the effects of metabolic cost and accuracy on movement speed  Journal Article
• Driving forces in cancer diagnostics.  Journal Article
• EVOLUTIONARY DIVERSIFICATION OF REEF CORALS: A COMPARISON OF THE MOLECULAR AND FOSSIL RECORDS  Journal Article
• Effects of Spaceflight on Human Induced Pluripotent Stem Cell-Derived Cardiomyocyte Structure and Function  Journal Article
• Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction  Journal Article
• Evolutionary rate in the protein interaction network  Journal Article
• Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data  Journal Article
• Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins  Journal Article
• Exploring community structure in biological networks with random graphs  Journal Article
• Fast-Find: A novel computational approach to analyzing combinatorial motifs  Journal Article
• Formation and emission of large furans and oxygenated hydrocarbons from flames  Journal Article
• Functional assessment of cerebral artery stenosis: A pilot study based on computational fluid dynamics  Journal Article
• Fusogenic activity of EFF-1 is regulated via dynamic localization in fusing somatic cells of C-elegans  Journal Article
• Genetic Architecture and Molecular Neuropathology of Human Cocaine Addiction  Journal Article
• Genome-Wide Identification of Alternatively Spliced mRNA Targets of Specific RNA-Binding Proteins  Journal Article
• Genomic approaches to the genetics of alcoholism.  Journal Article
• Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives  Journal Article
• Global identification of human transcribed sequences with genome tiling arrays  Journal Article
• Harmonizing semantic annotations for computational models in biology  Journal Article
• Harnessing pain heterogeneity and RNA transcriptome to identify blood-based pain biomarkers: a novel correlational study design and bioinformatics approach in a graded chronic constriction injury model  Journal Article
• High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing  Journal Article
• Hydrogels preserve native phenotypes of valvular fibroblasts through an elasticity-regulated PI3K/AKT pathway  Journal Article
• Identification of a novel cis-regulatory element involved in the heat shock response in Caenorhabditis elegans using microarray gene expression and computational methods  Journal Article
• Identifying pattern-defined regulatory islands in mammalian genomes  Journal Article
• Impact of flow on ligand-mediated bacterial flocculation  Journal Article
• Interactions of Escherichia coli RNA with bacteriophage MS2 coat protein: genomic SELEX  Journal Article
• Interpretable metric learning in comparative metagenomics: The adaptive Haar-like distance  Journal Article
• Intracellular Zn²⁺ transients modulate global gene expression in dissociated rat hippocampal neurons  Journal Article
• Learning Genetic Regulatory Network Connectivity from Time Series Data  Journal Article
• Make Room for Computing  Journal Article
• Microbial Communities of High-Elevation Fumaroles, Penitentes, and Dry Tephra "Soils" of the Puna de Atacama Volcanic Zone  Journal Article
• Molecular identification of potential pathogens in water and air of a hospital therapy pool  Journal Article
• Multiple pattern matching: a Markov chain approach  Journal Article
• Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction  Journal Article
• Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth  Journal Article
• Mutations in FGF17, IL17RD, DUSP6, SPRY4, and FLRT3 Are Identified in Individuals with Congenital Hypogonadotropic Hypogonadism  Journal Article
• Natural and artificial RNAs occupy the same restricted region of sequence space  Journal Article
• Network modeling predicts personalized gene expression and drug responses in valve myofibroblasts cultured with patient sera  Journal Article
• New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes  Journal Article
• PAR-TERRA is the main contributor to telomeric repeat-containing RNA transcripts in normal and cancer mouse cells.  Journal Article
• Polarization at metal-biomolecular interfaces in solution  Journal Article
• Polycistronic pre-mRNA processing in vitro: snRNP and pre-mRNA role reversal in trans-splicing  Journal Article
• Positive selection of yeast nonhomologous end-joining genes and a retrotransposon conflict hypothesis  Journal Article
• Prediction of multiple tandem OB-fold domains in telomere end-binding proteins Pot1 and Cdc13  Journal Article
• Principles of Motor Unit Physiology Evolve With Advances in Technology  Journal Article
• Proteomic informatics.  Journal Article
• Proteomics strategies for protein identification  Journal Article
• Prothymosin Alpha: A Novel Contributor to Estradiol Receptor Alpha-Mediated CD8⁺ T-Cell Pathogenic Responses and Recognition of Type 1 Collagen in Rheumatic Heart Valve Disease  Journal Article
• Quantifying the Impact of Chimera MS/MS Spectra on Peptide Identification in Large-Scale Proteomics Studies  Journal Article
• Recent host-shifts in ranaviruses: signatures of positive selection in the viral genome  Journal Article
• Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the program STRUCTURE  Journal Article
• Remodeling the cardiac transcriptional landscape with diet  Journal Article
• Reply to Schmitt et al.: Data-filtering schemes for avoiding double-counting in circle sequencing  Journal Article
• Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.  Journal Article
• Robust sequence selection method used to develop the FluChip diagnostic microarray for influenza virus  Journal Article
• SPINE: SParse eIgengene NEtwork Linking Gene Expression Clusters in Dehalococcoides mccartyi to Perturbations in Experimental Conditions  Journal Article
• Semantic role labeling for protein transport predicates  Journal Article
• Specifications of Standards in Systems and Synthetic Biology  Journal Article
• Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017  Journal Article
• Specifications of standards in systems and synthetic biology: status and developments in 2020  Journal Article
• Specifications of standards in systems and synthetic biology: status and developments in 2021  Journal Article
• Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022  Journal Article
• Stability analysis of the GAL regulatory network in Saccharomyces cerevisiae and Kluyveromyces lactis  Journal Article
• Structural implications of novel diversity in eucaryal RNase P RNA  Journal Article
• Structure and function analysis of the C-elegans aminophospholipid translocase TAT-1  Journal Article
• Structure of the BamC Two-Domain Protein Obtained by Rosetta with a Limited NMR Data Set  Journal Article
• Synthetic Biology Curation Tools (SYNBICT)  Journal Article
• Systematic calibration of a cell signaling network model  Journal Article
• Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis  Journal Article
• The Distributed Annotation System  Journal Article
• The ENCODE (ENCyclopedia of DNA elements) Project  Journal Article
• The Surprising Creativity of Digital Evolution: A Collection of Anecdotes from the Evolutionary Computation and Artificial Life Research Communities  Journal Article
• The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).  Journal Article
• The future of CABN-A conceptual triad: Psychological theory, neurobiological approaches, computational methods  Journal Article
• The impact of acute-stressor exposure on splenic innate immunity: A gene expression analysis  Journal Article
• Transcription factor enrichment analysis (TFEA) quantifies the activity of multiple transcription factors from a single experiment  Journal Article
• Two-stage ML Classifier for Identifying Host Protein Targets of the Dengue Protease  Journal Article
• Unlocking the potential of metagenomics through replicated experimental design  Journal Article
• Use of De Novo Transcriptome Libraries to Characterize a Novel Oleaginous Marine Chlorella Species during the Accumulation of Triacylglycerols  Journal Article
• Using the nucleotide substitution rate matrix to detect horizontal gene transfer  Journal Article
• Whole-Genome Sequencing of Inbred Mouse Strains Selected for High and Low Open-Field Activity  Journal Article
• iBioSim: a tool for the analysis and design of genetic circuits  Journal Article
• scHolography: a computational method for single-cell spatial neighborhood reconstruction and analysis.  Journal Article

broader concept

• Biology  PubMed MeSh Term

narrower concept

• Biology - Genomics  PubMed MeSh Term
• Biology - Metabolomics  PubMed MeSh Term
• Biology - Phenomics  PubMed MeSh Term
• Systems Biology  PubMed MeSh Term