Lladser, Manuel E. | CU Experts

Research

research overview

Dr. Lladser's is a probabilist and computational biologist. The overarching vision of his research and teaching is a synergism of mathematics and science. Currently, his research is mostly focussed in developing methods for dimensionality reduction of symbolic datasets, as well as assessing contamination in discrete datasets.

keywords

algorithmic probability, bioinformatics, computational biology, computational probability, discrete mathematics, discrete probability, mathematical biology

Publications

selected publications

book
- Variables aleatorias y simulación estocástica. Ed. 10. 2011
- Algorithmic probability and combinatorics. Ed. 520. 2010
chapter
- MATHEMATICAL APPROACHES FOR DESCRIBING MICROBIAL POPULATIONS: PRACTICE AND THEORY FOR EXTRAPOLATION OF RICH ENVIRONMENTS. 85-103. 2013
- Toward the asymptotic count of bi-modular hidden patterns under probabilistic dynamical sources: a case study. 425-451. 2012
- Occupancy distributions in Markov chains via Doeblin’s ergodicity coefficient. 79-92. 2010
- Prediction of unseen proportions in urn models with restricted sampling. 85-91. 2009
- Uniqueness of polynomial canonical representations. 463-469. 2007
- Mixed powers of generating functions. 171-182. 2006
conference proceeding
- FStitch: A fast and simple algorithm for detecting nascent RNA transcripts. 174-183. 2014
- Markovian embeddings of general random strings. 183-190. 2008
- Minimal Markov chain embeddings problems of pattern. 249-253. 2006
journal article
- Quantum Computation. Scholarpedia Journal. 52499-52499. 2018
- An Annotation Agnostic Algorithm for Detecting Nascent RNA Transcripts in GRO-Seq. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 1070-1081. 2017
- Balance Trees Reveal Microbial Niche Differentiation. mSystems. 2017
- RNA Pol II transcription model and interpretation of GRO-seq data. Journal of Mathematical Biology. 77-97. 2017
- Approximation of sojourn-times via maximal couplings: motif frequency distributions. Journal of Mathematical Biology. 147-182. 2014
- Correction: Estimation of Distribution Overlap of Urn Models. PLoS ONE. 2014
- Estimation of Distribution Overlap of Urn Models. PLoS ONE. 2012
- Random Cayley digraphs of diameter 2 and given degree. Discrete Mathematics & Theoretical Computer Science. 83-90. 2012
- Extrapolation of Urn Models via Poissonization: Accurate Measurements of the Microbial Unknown. PLoS ONE. 2011
- UniFrac: an effective distance metric for microbial community comparison. ISME Journal. 169-172. 2011
- Chiral histidine selection by D-ribose RNA. RNA. 2370-2383. 2010
- Natural and artificial RNAs occupy the same restricted region of sequence space. RNA. 280-289. 2010
- Comparison of methods for estimating the nucleotide substitution matrix. BMC Bioinformatics. 2008
- Information, probability, and the abundance of the simplest RNA active sites. Frontiers in Bioscience. 6060-6071. 2008
- Multiple pattern matching: a Markov chain approach. Journal of Mathematical Biology. 51-92. 2008
- Uniform formulae for coefficients of meromorphic functions in two variables. Part I. SIAM Journal on Discrete Mathematics. 811-828. 2006
- Domain of attraction of the quasi-stationary distributions for the Ornstein-Uhlenbeck process. Journal of Applied Probability. 511-520. 2000

Teaching

courses taught

APPM 3170 Discrete Applied Mathematics (Spring 2019)
APPM 4720 Open Topics in Applied Mathematics (Spring 2019)
APPM 5720 Open Topics in Applied Mathematics (Spring 2019)
APPM 6900 Independent Study (Spring 2019)
APPM 6950 Master's Thesis (Spring 2019)
APPM 7900 Independent Study (Spring 2019)
APPM 8990 Doctoral Dissertation (Spring 2019)
APPM 4560 Markov Processes, Queues, and Monte Carlo Simulations (Fall 2018)
APPM 5560 Markov Processes, Queues, and Monte Carlo Simulations (Fall 2018)
APPM 6900 Independent Study (Fall 2018)
APPM 6950 Master's Thesis (Fall 2018)
APPM 8990 Doctoral Dissertation (Fall 2018)
CSCI 4950 Senior Thesis (Fall 2018)
APPM 4720 Open Topics in Applied Mathematics (Spring 2018)
APPM 5720 Open Topics in Applied Mathematics (Spring 2018)
APPM 6900 Independent Study (Spring 2018)
APPM 6950 Master's Thesis (Spring 2018)
APPM 7900 Independent Study (Spring 2018)
APPM 8990 Doctoral Dissertation (Spring 2018)

Background

education and training

Ph.D., Ohio State University 2003
M.A., University of Wisconsin-Madison 2000
M.S., Univ de Chile (Chile) 1996

International Activities

global connections related to teaching and scholarly work (in recent years)

Africa Continent
Chile Country
Europe Continent
Ghana Country
Sweden Country
Turkey Country

Other Profiles

CU Experts

Lladser, Manuel E. Associate Professor

Positions

Research Areas

Research

research overview

keywords

Publications

selected publications

book

chapter

conference proceeding

journal article

Teaching

courses taught

Background

education and training

International Activities

global connections related to teaching and scholarly work (in recent years)

Other Profiles

ORCID iD

Google Scholar

ResearchGate