Ecological and Environmental Phenomena - Microbiota
PubMed MeSh Term
Overview
subject area of
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Heliconius Butterflies Host Characteristic and Phylogenetically Structured Adult-Stage Microbiomes Journal Article
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A Global Survey of Mycobacterial Diversity in Soil Journal Article
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A Metagenomic Investigation of Spatial and Temporal Changes in Sewage Microbiomes across a University Campus Journal Article
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A communal catalogue reveals Earth's multiscale microbial diversity Journal Article
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A dynamic microbial sulfur cycle in a serpentinizing continental ophiolite Journal Article
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A global metagenomic map of urban microbiomes and antimicrobial resistance Journal Article
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A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system Journal Article
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A phylogenetic model for the recruitment of species into microbial communities and application to studies of the human microbiome Journal Article
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Advancing Our Understanding of the Human Microbiome Using QIIME Journal Article
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Altered Microbiome Leads to Significant Phenotypic and Transcriptomic Differences in a Lipid Accumulating Chlorophyte Journal Article
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An altered intestinal mucosal microbiome in HIV-1 infection is associated with mucosal and systemic immune activation and endotoxemia Journal Article
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An empirically derived method for measuring human gut microbiome alpha diversity: Demonstrated utility in predicting health-related outcomes among a human clinical sample Journal Article
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An oligotrophic deep-subsurface community dependent on syntrophy is dominated by sulfur-driven autotrophic denitrifiers Journal Article
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Assessment of Airway Microbiota and Inflammation in Cystic Fibrosis Using Multiple Sampling Methods Journal Article
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Association between the oral microbiome and brain resting state connectivity in smokers Journal Article
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Bacterial Biofilm Thickness and Fungal Inhibitory Bacterial Richness Both Prevent Establishment of the Amphibian Fungal Pathogen Batrachochytrium dendrobatidis Journal Article
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Bacterial and archaeal lipids trace chemo(auto)trophy along the redoxcline in Vancouver Island fjords Journal Article
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Bidirectional gut-microbial mediated-brain signaling: A new player in stress physiology? (Commentary on O'Mahoney et al., 2019) Journal Article
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Can we manipulate the soil microbiome to promote carbon sequestration in croplands? Journal Article
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Captivity, Reintroductions, and the Rewilding of Amphibian-associated Bacterial Communities Journal Article
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Carbonate facies-specific stable isotope data record climate, hydrology, and microbial communities in Great Salt Lake, UT Journal Article
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Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment Journal Article
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Causes and consequences of differences in soil and seed microbiomes for two alpine plants Journal Article
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Characterization of the public transit air microbiome and resistome reveals geographical specificity Journal Article
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Chronic stress and captivity alter the cloacal microbiome of a wild songbird Journal Article
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Cohabiting family members share microbiota with one another and with their dogs Journal Article
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Community richness of amphibian skin bacteria correlates with bioclimate at the global scale Journal Article
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Comparison of Standard Culture-Based Method to Culture-Independent Method for Evaluation of Hygiene Effects on the Hand Microbiome Journal Article
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Consistent changes in the taxonomic structure and functional attributes of bacterial communities during primary succession Journal Article
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Consistent spatial patterns in microbial taxa of red squirrel gut microbiomes Journal Article
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Convergence of gut microbiomes in myrmecophagous mammals Journal Article
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Cross-biome patterns in soil microbial respiration predictable from evolutionary theory on thermal adaptation Journal Article
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Dietary Nitrate and Nitric Oxide Metabolism: Mouth, Circulation, Skeletal Muscle, and Exercise Performance Journal Article
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Diversity and evolution of the primate skin microbiome Journal Article
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Diversity decoupled from sulfur isotope fractionation in a sulfate-reducing microbial community Journal Article
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Diversity of gut microbiome in Rocky Mountainsnail across its native range Journal Article
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Diversity patterns of microbial eukaryotes mirror those of bacteria in Antarctic cryoconite holes Journal Article
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Do plant-soil interactions influence how the microbial community responds to environmental change? Journal Article
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Dynamic trophic shifts in bacterial and eukaryotic communities during the first 30 years of microbial succession following retreat of an Antarctic glacier Journal Article
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Early-life exercise may promote lasting brain and metabolic health through gut bacterial metabolites Journal Article
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Ecological Correlates of Large-Scale Turnover in the Dominant Members of Pseudacris crucifer Skin Bacterial Communities Journal Article
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Effects of Spatial Variability and Relic DNA Removal on the Detection of Temporal Dynamics in Soil Microbial Communities Journal Article
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Effects of Vaccination with 10-Valent Pneumococcal Non-Typeable Haemophilus influenza Protein D Conjugate Vaccine (PHiD-CV) on the Nasopharyngeal Microbiome of Kenyan Toddlers Journal Article
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Elevational Constraints on the Composition and Genomic Attributes of Microbial Communities in Antarctic Soils Journal Article
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Embracing the unknown: disentangling the complexities of the soil microbiome Journal Article
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Esophageal Microbiome in Eosinophilic Esophagitis Journal Article
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Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data Journal Article
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Exploring Service Dogs for Rehabilitation of Veteran With PTSD: A Microbiome Perspective Journal Article
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Extracellular Metabolism Sets the Table for Microbial Cross-Feeding Journal Article
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Feasibility of collection and analysis of microbiome data in a longitudinal randomized trial of community gardening Journal Article
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Fecal Microbiomes of Non-Human Primates in Western Uganda Reveal Species-Specific Communities Largely Resistant to Habitat Perturbation Journal Article
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Finding intestinal fortitude: Integrating the microbiome into a holistic view of depression mechanisms, treatment, and resilience Journal Article
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Functional redundancy in local spatial scale microbial communities suggests stochastic processes at an urban wilderness preserve in Austin, TX, USA Journal Article
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Genetic influences on the human oral microbiome Journal Article
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Global Patterns and Climatic Controls of Dust-Associated Microbial Communities Journal Article
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Glucocorticoids coordinate changes in gut microbiome composition in wild North American red squirrels Journal Article
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Gut microbiome composition and metabolomic profiles of wild western lowland gorillas (Gorilla gorilla gorilla) reflect host ecology Journal Article
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Gut microbiome of century-old snail specimens stable across time in preservation Journal Article
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Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes Journal Article
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Host identity is the dominant factor in the assembly of nematode and tardigrade gut microbiomes in Antarctic Dry Valley streams Journal Article
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Human microbiome transfer in the built environment differs based on occupants, objects, and buildings Journal Article
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Hygiene and other early childhood influences on the subsequent function of the immune system Journal Article
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Identifying fungal-host associations in an amphibian host system Journal Article
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Impacts of Plant-Based Foods in Ancestral Hominin Diets on the Metabolism and Function of Gut Microbiota In Vitro Journal Article
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Inhibitory bacteria reduce fungi on early life stages of endangered Colorado boreal toads (Anaxyrus boreas) Journal Article
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Investigation of bacterial repopulation after sinus surgery and perioperative antibiotics Journal Article
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Lambda Interferon Restructures the Nasal Microbiome and Increases Susceptibility to Staphylococcus aureus Superinfection Journal Article
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Large Comparative Analyses of Primate Body Site Microbiomes Indicate that the Oral Microbiome Is Unique among All Body Sites and Conserved among Nonhuman Primates Journal Article
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Leaf side determines the relative importance of dispersal versus host filtering in the phyllosphere microbiome Journal Article
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Learning representations of microbe-metabolite interactions. Journal Article
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Linking bacterial community composition to soil salinity along environmental gradients Journal Article
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Longitudinal homogenization of the microbiome between both occupants and the built environment in a cohort of United States Air Force Cadets Journal Article
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Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome Journal Article
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Metamorphosis of a Butterfly-Associated Bacterial Community Journal Article
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Microbial "old friends', immunoregulation and socioeconomic status Journal Article
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Microbial Communities of High-Elevation Fumaroles, Penitentes, and Dry Tephra "Soils" of the Puna de Atacama Volcanic Zone Journal Article
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Microbial community shifts in streams receiving treated wastewater effluent Journal Article
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Microbial diversity of an Antarctic subglacial community and high-resolution replicate sampling inform hydrological connectivity in a polar desert Journal Article
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Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities Journal Article
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Microbiome analyses of blood and tissues suggest cancer diagnostic approach Journal Article
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Microbiome of Affected and Unaffected Skin of Patients With Atopic Dermatitis Before and After Emollient Treatment Journal Article
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Microbiota, Immunoregulatory Old Friends and Psychiatric Disorders Journal Article
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Military-Related Exposures, Social Determinants of Health, and Dysbiosis: The United States-Veteran Microbiome Project (US-VMP) Journal Article
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Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention Journal Article
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Niche and metabolic principles explain patterns of diversity and distribution: theory and a case study with soil bacterial communities Journal Article
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Nine (not so simple) steps: a practical guide to using machine learning in microbial ecology Journal Article
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Nitrogen Enrichment during Soil Organic Matter Burning and Molecular Evidence of Maillard Reactions Journal Article
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Non-lithifying microbial ecosystem dissolves peritidal lime sand Journal Article
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Novel bacterial lineages associated with boreal moss species Journal Article
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Novosphingobium and Its Potential Role in Chronic Obstructive Pulmonary Diseases: Insights from Microbiome Studies Journal Article
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Nutrient Addition Dramatically Accelerates Microbial Community Succession Journal Article
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Of poisons and parasites-the defensive role of tetrodotoxin against infections in newts Journal Article
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Optimizing the Production of Nursery-Based Biological Soil Crusts for Restoration of Arid Land Soils Journal Article
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Palaeoclimate explains a unique proportion of the global variation in soil bacterial communities Journal Article
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Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer Journal Article
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Predicting fungal infection rate and severity with skin-associated microbial communities on amphibians Journal Article
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Predicting the responsiveness of soil biodiversity to deforestation: a cross-biome study Journal Article
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Primate vaginal microbiomes exhibit species specificity without universal Lactobacillus dominance Journal Article
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Probiotic treatment restores protection against lethal fungal infection lost during amphibian captivity Journal Article
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Purifying the Impure: Sequencing Metagenomes and Metatranscriptomes from Complex Animal-associated Samples Journal Article
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Quantifying human impact on Earth's microbiome Journal Article
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Refining the Application of Microbial Lipids as Tracers of Staphylococcus aureus Growth Rates in Cystic Fibrosis Sputum Journal Article
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Relating Metatranscriptomic Profiles to the Micropollutant Biotransformation Potential of Complex Microbial Communities Journal Article
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Relating belowground microbial composition to the taxonomic, phylogenetic, and functional trait distributions of trees in a tropical forest Journal Article
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Relationship between dissolved organic matter quality and microbial community composition across polar glacial environments Journal Article
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Journal Article
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Review of human hand microbiome research Journal Article
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Single-Stranded DNA Viruses in Antarctic Cryoconite Holes Journal Article
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Sinus culture poorly predicts resident microbiota Journal Article
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Sinus microbiota varies among chronic rhinosinusitis phenotypes and predicts surgical outcome Journal Article
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Skin Microbiome in Patients With Psoriasis Before and After Balneotherapy at the Thermal Care Center of La Roche-Posay Journal Article
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Skin microbiome and acne vulgaris: Staphylococcus, a new actor in acne Journal Article
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Spatial autocorrelation of microbial communities atop a debris-covered glacier is evidence of a supraglacial chronosequence Journal Article
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Spatial patterning of soil microbial communities created by fungus-farming termites Journal Article
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Spatio-temporal dynamics of soil bacterial communities as a function of Amazon forest phenology Journal Article
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Specific Microbiome Changes in a Mouse Model of Parenteral Nutrition Associated Liver Injury and Intestinal Inflammation Journal Article
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Statistical Learning and Uncommon Soil Microbiota Explain Biogeochemical Responses after Wildfire Journal Article
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Strong Dispersal Limitation of Microbial Communities at Shackleton Glacier, Antarctica Journal Article
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Structure of bacterial and eukaryote communities reflect in situ controls on community assembly in a high-alpine lake Journal Article
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Succession of toxicity and microbiota in hydraulic fracturing flowback and produced water in the Denver-Julesburg Basin Journal Article
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Sulfur cycling at natural hydrocarbon and sulfur seeps in Santa Paula Creek, CA Journal Article
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Tales from the tomb: the microbial ecology of exposed rock surfaces Journal Article
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Temporal variability is a personalized feature of the human microbiome Journal Article
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The Sphagnum microbiome: new insights from an ancient plant lineage Journal Article
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The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions Journal Article
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The Effect of PPI Use on Human Gut Microbiota and Weight Loss in Patients Undergoing Laparoscopic Roux-en-Y Gastric Bypass Journal Article
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The Effects of Airway Microbiome on Corticosteroid Responsiveness in Asthma Journal Article
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The Future of Environmental DNA in Forensic Science Journal Article
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The Gut Microbiota Appears to Compensate for Seasonal Diet Variation in the Wild Black Howler Monkey (Alouatta pigra) Journal Article
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The Microbiome of the Built Environment and Human Behavior: Implications for Emotional Health and Well-Being in Postmodern Western Societies Journal Article
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The Microbiome of the Middle Meatus in Healthy Adults Journal Article
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The Microbiota, Immunoregulation, and Mental Health: Implications for Public Health. Journal Article
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The Primate Vaginal Microbiome: Comparative Context and Implications for Human Health and Disease Journal Article
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The Rhizosphere Responds: Rich Fen Peat and Root Microbial Ecology after Long-Term Water Table Manipulation Journal Article
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The Role of Gut Microbes in Satisfying the Nutritional Demands of Adult and Juvenile Wild, Black Howler Monkeys (Alouatta pigra) Journal Article
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The Treatment-Naive Microbiome in New-Onset Crohn's Disease Journal Article
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The amphibian skin-associated microbiome across species, space and life history stages Journal Article
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The disappearing periglacial ecosystem atop Mt. Kilimanjaro supports both cosmopolitan and endemic microbial communities Journal Article
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The diversity and function of sourdough starter microbiomes Journal Article
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The global-scale distributions of soil protists and their contributions to belowground systems Journal Article
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The influence of soil age on ecosystem structure and function across biomes Journal Article
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The interplay between microbial communities and soil properties Journal Article
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The microbiome of the built environment and mental health Conference Proceeding
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Tracking down the sources of experimental contamination in microbiome studies Journal Article
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Treating cattle with antibiotics affects greenhouse gas emissions, and microbiota in dung and dung beetles Journal Article
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Twenty Important Research Questions in Microbial Exposure and Social Equity Journal Article
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Using null models to infer microbial co-occurrence networks Journal Article
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Variable influences of soil and seed-associated bacterial communities on the assembly of seedling microbiomes Journal Article
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Variable responses of human and non-human primate gut microbiomes to a Western diet Journal Article
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Variation of near surface atmosphere microbial communities at an urban and a suburban site in Philadelphia, PA, USA Journal Article
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Variations in the microbiome due to storage preservatives are not large enough to obscure variations due to factors such as host population, host species, body site, and captivity Journal Article
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Volatile organic compounds from leaf litter decomposition alter soil microbial communities and carbon dynamics Journal Article
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Walls talk: Microbial biogeography of homes spanning urbanization Journal Article
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