Escherichia coli Proteins PubMed MeSh Term

Overview

subject area of

• 2-DIMENSIONAL CRYSTALS OF ESCHERICHIA-COLI MALTOPORIN AND THEIR INTERACTION WITH THE MALTOSE-BINDING PROTEIN  Journal Article
• A Synonymous Mutation Upstream of the Gene Encoding a Weak-Link Enzyme Causes an Ultrasensitive Response in Growth Rate  Journal Article
• A comparative study of metabolic engineering anti-metabolite tolerance in Escherichia coli  Journal Article
• A dominant negative mutant of the E. coli RNA helicase DbpA blocks assembly of the 50S ribosomal subunit.  Journal Article
• A general strategy to solve the phase problem in RNA crystallography  Journal Article
• A genomics approach to improve the analysis and design of strain selections  Journal Article
• A kinetic rationale for functional redundancy in fatty acid biosynthesis  Journal Article
• Adaptation mechanism of the aspartate receptor: Electrostatics of the adaptation subdomain play a key role in modulating kinase activity  Journal Article
• Ambivalent Incorporation of the Fluorescent Cytosine Analogues tC and tCo by Human DNA Polymerase alpha and Klenow Fragment  Journal Article
• Amino acid content of recombinant proteins influences the metabolic burden response  Journal Article
• Attractant regulation of the aspartate receptor-kinase complex: Limited cooperative interactions between receptors and effects of the receptor modification state  Journal Article
• Backtracked and paused transcription initiation intermediate of Escherichia coli RNA polymerase  Journal Article
• Bacterial chemoreceptors: high-performance signaling in networked arrays  Journal Article
• BamA POTRA Domain Interacts with a Native Lipid Membrane Surface  Journal Article
• CIRCULARLY PERMUTED TRANSFER-RNAS AS SPECIFIC PHOTOAFFINITY PROBES OF RIBONUCLEASE-P RNA STRUCTURE  Journal Article
• CRISPR/Cas9 recombineering-mediated deep mutational scanning of essential genes in Escherichia coli  Journal Article
• CheA kinase of bacterial chemotaxis: Chemical mapping of four essential docking sites  Journal Article
• Chemotaxis receptor complexes: From signaling to assembly  Journal Article
• Click Nucleic Acid Mediated Loading of Prodrug Activating Enzymes in PEG-PLGA Nanoparticles for Combination Chemotherapy  Journal Article
• Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: delineation of a novel sub-family of bacterial DEAD proteins  Journal Article
• ClpS is an essential component of the N-end rule pathway in Escherichia coli  Journal Article
• Comparative Hydrogen-Deuterium Exchange for a Mesophilic vs Thermophilic Dihydrofolate Reductase at 25 degrees C: Identification of a Single Active Site Region with Enhanced Flexibility in the Mesophilic Protein  Journal Article
• Conserved glycine residues in the cytoplasmic domain of the aspartate receptor play essential roles in kinase coupling and on-off switching  Journal Article
• Conserved residues in the N-domain of the AAA+ chaperone ClpA regulate substrate recognition and unfolding  Journal Article
• Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA  Journal Article
• Cooperativity between bacterial chemotaxis receptors  Journal Article
• Crystal Structure of BamB Bound to a Periplasmic Domain Fragment of BamA, the Central Component of the beta-Barrel Assembly Machine  Journal Article
• Crystal Structure of YaeT: Conformational Flexibility and Substrate Recognition  Journal Article
• Crystal structure of Escherichia coli ArnA (PmrI) decarboxylase domain. A key enzyme for lipid a modification with 4-amino-4-deoxy-L-arabinose and polymyxin resistance  Journal Article
• Crystal structure of Skp, a prefoldin-like chaperone that protects soluble and membrane proteins from aggregation  Journal Article
• Crystal structure of the ribonucleoprotein core of the signal recognition particle  Journal Article
• Deep scanning lysine metabolism in Escherichia coli  Journal Article
• Defining a Key Receptor-CheA Kinase Contact and Elucidating Its Function in the Membrane-Bound Bacterial Chemosensory Array: A Disulfide Mapping and TAM-IDS Study  Journal Article
• Design of a De Novo Aggregating Antimicrobial Peptide and a Bacterial Conjugation-Based Delivery System  Journal Article
• Detection of a conserved alpha-helix in the kinase-docking region of the aspartate receptor by cysteine and disulfide scanning  Journal Article
• Engineered Socket Study of Signaling through a Four-Helix Bundle: Evidence for a Yin-Yang Mechanism in the Kinase Control Module of the Aspartate Receptor  Journal Article
• Engineering improved ethanol production in Escherichia coli with a genome-wide approach  Journal Article
• Escherichia coli DbpA is a 3' --> 5' RNA helicase.  Journal Article
• Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA  Journal Article
• Evidence that the adaptation region of the aspartate receptor is a dynamic four-helix bundle: Cysteine and disulfide scanning studies  Journal Article
• Expression, purification, crystallization and preliminary diffraction analysis of RNase P protein from Thermotoga maritima  Journal Article
• Extreme Dynamics in the BamA beta-Barrel Seam  Journal Article
• Flexibility in the Periplasmic Domain of BamA Is Important for Function  Journal Article
• Generation and Analysis of a Mouse Intestinal Metatranscriptome through Illumina Based RNA-Sequencing  Journal Article
• Genome-Wide Mapping of Furfural Tolerance Genes in Escherichia coli  Journal Article
• Genome-scale identification and characterization of ethanol tolerance genes in Escherichia coli  Journal Article
• Hidden resources in the Escherichia coli genome restore PLP synthesis and robust growth after deletion of the essential gene pdxB  Journal Article
• Histidine 66 in Escherichia coli elongation factor tu selectively stabilizes aminoacyl-tRNAs.  Journal Article
• Identification of Subunit Binding Positions on a Model Fork and Displacements That Occur during Sequential Assembly of the Escherichia coli Primosome  Journal Article
• Identification of a 21 amino acid peptide conferring 3-hydroxypropionic acid stress-tolerance to Escherichia coli  Journal Article
• Identification of a site critical for kinase regulation on the central processing unit (CPU) helix of the aspartate receptor  Journal Article
• In vitro evolution of the DNA binding sites of Escherichia coli methionine repressor, MetJ  Journal Article
• Increasing and Decreasing the Ultrastability of Bacterial Chemotaxis Core Signaling Complexes by Modifying Protein-Protein Contacts  Journal Article
• Inhibitory cross-talk upon introduction of a new metabolic pathway into an existing metabolic network  Journal Article
• Interaction of Escherichia coli DbpA with 23S rRNA in different functional states of the enzyme.  Journal Article
• Interaction of Escherichia coli host factor protein with Q beta ribonucleic acid.  Journal Article
• Interaction of Escherichia coli host factor protein with oligoriboadenylates.  Journal Article
• Isolated Bacterial Chemosensory Array Possesses Quasi- and Ultrastable Components: Functional Links between Array Stability, Cooperativity, and Order  Journal Article
• Kinetic analysis of the RNA-dependent adenosinetriphosphatase activity of DbpA, an Escherichia coli DEAD protein specific for 23S ribosomal RNA  Journal Article
• Labeled EF-Tus for rapid kinetic studies of pretranslocation complex formation.  Journal Article
• LacI(Ts)-Regulated Expression as an In Situ Intracellular Biomolecular Thermometer  Journal Article
• Manipulating redox and ATP balancing for improved production of succinate in E. coli  Journal Article
• Mechanics of Hsp70 chaperones enables differential interaction with client proteins  Journal Article
• Microbial Siderophore Enterobactin Promotes Mitochondrial Iron Uptake and Development of the Host via Interaction with ATP Synthase  Journal Article
• Multiple C-Terminal Tails within a Single E. coli SSB Homotetramer Coordinate DNA Replication and Repair  Journal Article
• Multiple Turnovers of the Nicotino-Enzyme PdxB Require alpha-Keto Acids as Cosubstrates  Journal Article
• Mutation of the arginine finger in the active site of Escherichia coli DbpA abolishes ATPase and helicase activity and confers a dominant slow growth phenotype.  Journal Article
• New Insights into Bacterial Chemoreceptor Array Structure and Assembly from Electron Cryotomography  Journal Article
• Only One ATP-binding DnaX Subunit Is Required for Initiation Complex Formation by the Escherichia coli DNA Polymerase III Holoenzyme  Journal Article
• Photoaffinity cross-linking and RNA structure analysis  Journal Article
• Physiologic Stresses Reveal a Salmonella Persister State and TA Family Toxins Modulate Tolerance to These Stresses  Journal Article
• Polyelectrolyte Multilayers Enhance the Dry Storage and pH Stability of Physically Entrapped Enzymes  Journal Article
• Quantitative analysis of aspartate receptor signaling complex reveals that the homogeneous two-state model is inadequate: Development of a heterogeneous two-state model  Journal Article
• Rapid and Efficient One-Step Metabolic Pathway Integration in E-coli  Journal Article
• Rapid and simple protein-stability screens: application to membrane proteins  Journal Article
• Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides  Journal Article
• Regulation of open complex formation at the Escherichia coli galactose operon promoters. Simultaneous interaction of RNA polymerase, gal repressor and CAP/cAMP.  Journal Article
• Self-assembled lipid and membrane protein polyhedral nanoparticles  Journal Article
• Sequence-dependent nanometer-scale conformational dynamics of individual RecBCD-DNA complexes  Journal Article
• Side chains at the membrane-water interface modulate the signaling state of a transmembrane receptor  Journal Article
• Signaling and sensory adaptation in Escherichia coli chemoreceptors: 2015 update  Journal Article
• Signaling domain of the aspartate receptor is a helical hairpin with a localized kinase docking surface: Cysteine and disulfide scanning studies  Journal Article
• Single-Molecule Studies of RecBCD  Journal Article
• Small Angle X-ray Scattering (SAXS) Characterization of the POTRA Domains of BamA  Journal Article
• Structural insights into the signal recognition particle  Journal Article
• Structure and Flexibility of the Complete Periplasmic Domain of BamA: The Protein Insertion Machine of the Outer Membrane  Journal Article
• Structure of the BamC Two-Domain Protein Obtained by Rosetta with a Limited NMR Data Set  Journal Article
• The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23S rRNA  Journal Article
• The NH2-terminal php domain of the alpha subunit of the Escherichia coli replicase binds the epsilon proofreading subunit.  Journal Article
• The PriA Replication Restart Protein Blocks Replicase Access Prior to Helicase Assembly and Directs Template Specificity through Its ATPase Activity  Journal Article
• The Rcs phosphorelay system is specific to enteric pathogens/commensals and activates ydeI, a gene important for persistent Salmonella infection of mice  Journal Article
• The Structure and Specificity of the Type III Secretion System Effector NleC Suggest a DNA Mimicry Mechanism of Substrate Recognition  Journal Article
• The cavity-chaperone Skp protects its substrate from aggregation but allows independent folding of substrate domains  Journal Article
• The interface between Escherichia coli elongation factor Tu and aminoacyl-tRNA.  Journal Article
• Three serendipitous pathways in E. coli can bypass a block in pyridoxal-5 '-phosphate synthesis  Journal Article
• Trackable multiplex recombineering for gene-trait mapping in E. coli.  Journal Article
• Tuning the affinity of aminoacyl-tRNA to elongation factor Tu for optimal decoding.  Journal Article
• Uncompetitive substrate inhibition and noncompetitive inhibition by 5-n-undecyl-6-hydroxy-4,7-dioxobenzothiazole (UHDBT) and 2-n-Nonyl-4-hydroxyquinoline-N-oxide (NQNO) is observed for the cytochrome bo(3) complex: Implications for a Q(H-2)-loop proton translocation mechanism  Journal Article
• YxiN is a modular protein combining a DEx(D/H) core and a specific RNA-binding domain.  Journal Article

broader concept

• Bacterial Proteins  PubMed MeSh Term