Methods in Molecular Biology Journal

Overview

publication venue for

• Endocytosis Assays Using Cleavable Fluorescent Dyes 2022
• Force-Activated DNA Substrates for In Situ Generation of ssDNA and Designed ssDNA/dsDNA Structures in an Optical-Trapping Assay 2022
• Live Cell Imaging of Spatiotemporal Ca2+ Fluctuation Responses to Anticancer Drugs. 2022
• Computational Modeling for Biomimetic Sensors 2019
• Functional Reconstitution of Intracellular Vesicle Fusion Using Purified SNAREs and Sec1/Munc18 (SM) Proteins 2019
• Measuring Low-Picomolar Apparent Binding Affinities by Minigel Electrophoretic Mobility Shift 2019
• Quantification of Leaf Phloem Anatomical Features with Microscopy 2019
• Temporal Metabolite, Ion, and Enzyme Activity Profiling Using Fluorescence Microscopy and Genetically Encoded Biosensors 2019
• Characterizing Protein-Protein Interactions Using Deep Sequencing Coupled to Yeast Surface Display 2018
• Native Gel Approaches in Studying Proteasome Assembly and Chaperones 2018
• A Surface-Coupled Optical Trap with 1-bp Precision via Active Stabilization 2017
• Biochemical and Biophysical Methods for Analysis of Poly(ADP-Ribose) Polymerase 1 and Its Interactions with Chromatin 2017
• Calorimetric Measurement of SH2 Domain Ligand Affinities 2017
• Lipase Activation and Stabilization in Room-Temperature Ionic Liquids 2017
• NMR Chemical Shift Mapping of SH2 Peptide Interactions 2017
• The Polymerase Step Reaction (PSR) Method for Gene and Library Synthesis 2017
• Transplantation of Skeletal Muscle Stem Cells 2017
• Identification of Endogenous mRNA-Binding Proteins in Yeast Using Crosslinking and PolyA Enrichment 2016
• Isolation, Culture, Functional Assays, and Immunofluorescence of Myofiber-Associated Satellite Cells 2016
• Measuring TGF-beta Ligand Dynamics in Culture Medium 2016
• Soaking Hexammine Cations into RNA Crystals to Obtain Derivatives for Phasing Diffraction Data 2016
• Bioinformatics Analysis to Identify RNA-Protein Interactions in Oogenesis. 2015
• Efficient analysis methods in synthetic biology. 2015
• In vivo cross-linking followed by polyA enrichment to identify yeast mRNA binding proteins. 2015
• Small Angle X-ray Scattering (SAXS) Characterization of the POTRA Domains of BamA 2015
• Studying the Affinity, Kinetic Stability, and Specificity of RNA/Protein Interactions: SINE ncRNA/Pol II Complexes as a Model System 2015
• The synthetic biology open language. 2015
• Caspase Protocols in Caenorhabditis elegans 2014
• Quantitative Measurement of Ca²⁺ and Zn²⁺ in Mammalian Cells Using Genetically Encoded Fluorescent Biosensors 2014
• An introduction to best practices in free energy calculations. 2013
• In situ AFM analysis investigating disassembly of DNA nanoparticles and nano-films. 2013
• Using FRET to monitor protein-induced DNA bending: the TBP-TATA complex as a model system. 2013
• Best Practices in Free Energy Calculations for Drug Design 2012
• Bistability in one equation or fewer 2012
• Indwelling Supradural Catheters for Induction of Facial Allodynia: Surgical Procedures, Application of Inflammatory Stimuli, and Behavioral Testing 2012
• Single-molecule optical-trapping measurements with DNA anchored to an array of gold nanoposts. 2012
• Unilateral T13 and L1 Dorsal Root Avulsion: Methods for a Novel Model of Central Neuropathic Pain 2012
• LC/TOF-MS Analysis of Pesticides in Fruits and Vegetables: The Emerging Role of Accurate Mass in the Unambiguous Identification of Pesticides in Food 2011
• Screening for Radiation Sensitizers of Drosophila Checkpoint Mutants 2011
• Templated Assembly of DNA Origami Gold Nanoparticle Arrays on Lithographically Patterned Surfaces 2011
• Analysis of Ligand-Dependent Nuclear Accumulation of Smads in TGF-beta Signaling 2010
• Analysis of MAP Kinases by Hydrogen Exchange Mass Spectrometry 2010
• Measuring the Absolute Abundance of the Smad Transcription Factors Using Quantitative Immunoblotting 2010
• Methods to Characterize the Effect of DNA-Modifying Compounds on Nucleosomal DNA 2010
• Single-Molecule Studies of RecBCD 2010
• Determining structures of RNA aptamers and riboswitches by X-ray crystallography. 2009
• Monitoring RNA-ligand interactions using isothermal titration calorimetry. 2009
• A simple crosslinking method, CLAMP, to map the sites of RNA-contacting domains within a protein. 2008
• Cardiomyocyte preparation, culture, and gene transfer. 2007
• Quantitative analysis of atherosclerotic lesion composition in mice. 2006
• Control of mitotic entry after DNA damage in Drosophila. 2004
• Methods in functional proteomics: two-dimensional polyacrylamide gel electrophoresis with immobilized pH gradients, in-gel digestion and identification of proteins by mass spectrometry. 2004
• Practical methods for deuterium exchange/mass spectrometry. 2004
• Two-dimensional gel electrophoresis for the identification of signaling targets. 2004
• Suppressor tRNAs: protocols and applications for cardiac gene transfer. 2003
• Use of fluorescence resonance energy transfer to monitor Ca(2+)-triggered membrane docking of C2 domains. 2002
• Expression and purification of recombinant histones and nucleosome reconstitution. 1999
• Toeprinting assays. Mapping by blocks to reverse transcriptase primer extension. 1998
• Synthesis and purification of phosphorodithioate DNA. 1993
• Biomimetic Sensing 2019
• Computational Modeling of Signaling Networks 2012
• Facile Assembly of Combinatorial Mutagenesis Libraries Using Nicking Mutagenesis 2022
• Forming Large Effective Ultrasound Arrays Using the Swept Synthetic Aperture Technique 2022
• Cross-Reactive, Self-Encoded Polymer Film Arrays for Sensor Applications 2019
• In Situ AFM Analysis Investigating Disassembly of DNA Nanoparticles and Nanofilms 2019
• Lipoic Acid Ligase-Promoted Bioorthogonal Protein Modification and Immobilization 2019
• Midline (Central) Fluid Percussion Model of Traumatic Brain Injury 2016
• Visualization of IncRNA by Single-Molecule Fluorescence In Situ Hybridization 2015
• Seeded Microtubule Growth for Cryoelectron Microscopy of End-Binding Proteins 2014
• Preparation of Normalized cDNA Libraries for 454 Titanium Transcriptome Sequencing 2012
• Lipase Activation and Stabilization in Room-Temperature Ionic Liquids 2011

Research

keywords

• 0601 Biochemistry and Cell Biology, 0399 Other Chemical Sciences