Biological Phenomena - Phylogeny PubMed MeSh Term

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• A Conserved Rubredoxin Is Necessary for Photosystem II Accumulation in Diverse Oxygenic Photoautotrophs  Journal Article
• A Cross-Taxon Analysis of Insect-Associated Bacterial Diversity  Journal Article
• A Direct PCR Approach to Accelerate Analyses of Human-Associated Microbial Communities  Journal Article
• A Jungle in There: Bacteria in Belly Buttons are Highly Diverse, but Predictable  Journal Article
• A RHODOPSIN GENE EXPRESSED IN PHOTORECEPTOR CELL R7 OF THE DROSOPHILA EYE - HOMOLOGIES WITH OTHER SIGNAL-TRANSDUCING MOLECULES  Journal Article
• A Rich Fossil Record Yields Calibrated Phylogeny for Acanthaceae (Lamiales) and Evidence for Marked Biases in Timing and Directionality of Intercontinental Disjunctions  Journal Article
• A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses  Journal Article
• A contribution to the phylogeny of agglutinating Arcellinida (Amoebozoa) based on SSU rRNA gene sequences  Journal Article
• A cornucopia of human polyomaviruses  Journal Article
• A global atlas of the dominant bacteria found in soil  Journal Article
• A metaanalysis of bat phylogenetics and positive selection based on genomes and transcriptomes from 18 species  Journal Article
• A mitochondrial DNA phylogeny of the endangered vipers of the Vipera ursinii complex  Journal Article
• A molecular phylogenetic study of the genus Ribeiroia (Digenea): Trematodes known to cause limb malformations in amphibians  Journal Article
• A novel R3 MYB transcriptional repressor associated with the loss of floral pigmentation in Iochroma  Journal Article
• A phylogenetic model for the recruitment of species into microbial communities and application to studies of the human microbiome  Journal Article
• A taxonomically broad metagenomic survey of 339 species spanning 57 families suggests cystobasidiomycete yeasts are not ubiquitous across all lichens  Journal Article
• A unified nomenclature for protein subunits of Mediator complexes linking transcriptional regulators to RNA polymerase II  Journal Article
• A universal mode of helix packing in RNA  Journal Article
• ANChors away: an actin based mechanism of nuclear positioning  Journal Article
• Acquisition of nonspecific Bartonella strains by the northern grasshopper mouse (Onychomys leucogaster)  Journal Article
• Across the great divide: genetic forensics reveals misidentification of endangered cutthroat trout populations  Journal Article
• Adrenal androgen production in catarrhine primates and the evolution of adrenarche.  Journal Article
• Amphioxus and lamprey AP-2 genes: implications for neural crest evolution and migration patterns  Journal Article
• An ancient lineage of slow worms, genus Anguis (Squamata: Anguidae), survived in the Italian Peninsula  Journal Article
• An expanded clade of rodent Trim5 genes  Journal Article
• Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G  Journal Article
• Ancient and Recent Adaptive Evolution of Primate Non-Homologous End Joining Genes  Journal Article
• Ancient origins of metazoan gonadotropin-releasing hormone and their receptors revealed by phylogenomic analyses  Journal Article
• Archaea: The Final Frontier of Chromatin  Journal Article
• Assembly of root-associated bacteria communities: interactions between abiotic and biotic factors  Journal Article
• BOTANY AND A CHANGING WORLD: INTRODUCTION TO THE SPECIAL ISSUE ON GLOBAL BIOLOGICAL CHANGE  Journal Article
• Bacteria and diatom co-occurrence patterns in microbial mats from polar desert streams  Journal Article
• Bacterial Communities Associated with the Lichen Symbiosis  Journal Article
• Bacterial Community Structure Along Moisture Gradients in the Parafluvial Sediments of Two Ephemeral Desert Streams  Journal Article
• Bacterial Community Variation in Human Body Habitats Across Space and Time  Journal Article
• Bacterial Succession on the Leaf Surface: A Novel System for Studying Successional Dynamics  Journal Article
• Bacterial communities of Bartonella-Positive fleas: Diversity and community assembly patterns  Journal Article
• Bacterial phylogeny structures soil resistomes across habitats  Journal Article
• Biodiversity of protists and nematodes in the wild nonhuman primate gut  Journal Article
• Biogeography and landscape-scale diversity of the dominant crenarchaeota of soil  Journal Article
• Body size and activity times mediate mammalian responses to climate change  Journal Article
• Brain growth, life history, and cognition in primate and human evolution  Journal Article
• COMPARATIVE ANALYSIS OF COMPLETE CHLOROPLAST GENOME SEQUENCE AND INVERSION VARIATION IN LASTHENIA BURKEI (MADIEAE, ASTERACEAE)  Journal Article
• COMPARATIVE ANATOMY, MORPHOLOGY, AND MOLECULAR PHYLOGENETICS OF THE AFRICAN GENUS SATANOCRATER (ACANTHACEAE)  Journal Article
• COMPARATIVE GENOMIC AND POPULATION GENETIC ANALYSES INDICATE HIGHLY POROUS GENOMES AND HIGH LEVELS OF GENE FLOW BETWEEN DIVERGENT HELIANTHUS SPECIES  Journal Article
• CRISPR/Cas9-mediated mutagenesis in the sea lamprey Petromyzon marinus: a powerful tool for understanding ancestral gene functions in vertebrates  Journal Article
• Caenorhabditis elegans EVL-14/PDS-5 and SCC-3 are essential for sister chromatid cohesion in meiosis and mitosis  Journal Article
• Changes through time: integrating microorganisms into the study of succession  Journal Article
• Characterization of Airborne Microbial Communities at a High-Elevation Site and Their Potential To Act as Atmospheric Ice Nuclei  Journal Article
• Characterization of Bartonella strains isolated from black-tailed prairie dogs (Cynomys ludovicianus)  Journal Article
• Characterization of growing bacterial populations in McMurdo Dry Valley soils through stable isotope probing with O-18-water  Journal Article
• Characterization of the Fecal Microbiome from Non-Human Wild Primates Reveals Species Specific Microbial Communities  Journal Article
• Chloroplast Sec14-like 1 (CPSFL1) is essential for normal chloroplast development and affects carotenoid accumulation in Chlamydomonas  Journal Article
• Choosing among alternative trees of multigene families  Journal Article
• Climate change alters ecological strategies of soil bacteria  Journal Article
• Commensal associations and benthic habitats shape macroevolution of the bivalve Glade Galeommatoidea  Journal Article
• Comparative Genomics of Gardnerella vaginalis Strains Reveals Substantial Differences in Metabolic and Virulence Potential  Journal Article
• Comparative analysis of the mitochondrial genomes of six newly sequenced diatoms reveals group II introns in the barcoding region of cox1  Journal Article
• Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients  Journal Article
• Comparison of methods for estimating the nucleotide substitution matrix  Journal Article
• Comparison of microbial community compositions of two subglacial environments reveals a possible role for microbes in chemical weathering processes  Journal Article
• Concerted evolution of duplicated mitochondrial control regions in three related seabird species  Journal Article
• Conservation Genetics of a Critically Endangered Limpet Genus and Rediscovery of an Extinct Species  Journal Article
• Conservation and divergence of Bmp2a, Bmp2b, and Bmp4 expression patterns within and between dentitions of teleost fishes  Journal Article
• Conservation of a dinucleotide simple sequence repeat locus in sharks  Journal Article
• Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems  Journal Article
• Constructional Morphology Within the Head of Hammerhead Sharks (Sphyrnidae)  Journal Article
• Contrasting evolutionary histories of the legless lizards slow worms (Anguis) shaped by the topography of the Balkan Peninsula  Journal Article
• Contributions of natural and sexual selection to the evolution of premating reproductive isolation: a research agenda  Journal Article
• Control of yeast retrotransposons mediated through nucleoporin evolution  Journal Article
• Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny  Journal Article
• Convergent evolution of floral shape tied to pollinator shifts in Iochrominae (Solanaceae)  Journal Article
• Craniofacial biomechanics and functional and dietary inferences in hominin paleontology  Journal Article
• Cross-species cluster co-conservation: a new method for generating protein interaction networks  Journal Article
• Crystal structure of a group I ribozyme domain: Principles of RNA packing  Journal Article
• Culture-Independent Analysis of Aerosol Microbiology in a Metropolitan Subway System  Journal Article
• Cycling Behavior and Memory Formation  Journal Article
• Decreases in average bacterial community rRNA operon copy number during succession  Journal Article
• Dense sampling of bird diversity increases power of comparative genomics  Journal Article
• Description of a new diatom genus Dorofeyukea gen. nov. with remarks on phylogeny of the family Stauroneidaceae  Journal Article
• Differences Between the Normal Vaginal Bacterial Community of Baboons and That of Humans  Journal Article
• Differences in developmental potential predict the contrasting patterns of dental diversification in characiform and cypriniform fishes  Journal Article
• Differential Effects of a Mutation on the Normal and Promiscuous Activities of Orthologs: Implications for Natural and Directed Evolution  Journal Article
• Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides  Journal Article
• Differential mesodermal expression of two amphioxus MyoD family members (AmphiMRF1 and AmphiMRF2)  Journal Article
• Differentially expressed genes match bill morphology and plumage despite largely undifferentiated genomes in a Holarctic songbird  Journal Article
• Disentangling geographical, biotic, and abiotic drivers of plant diversity in neotropical Ruellia (Acanthaceae)  Journal Article
• Divergent evolution within protein superfolds inferred from profile-based phylogenetics  Journal Article
• Diversification of R2R3-MYB Transcription Factors in the Tomato Family Solanaceae  Journal Article
• Diversification of methanogens into hyperalkaline serpentinizing environments through adaptations to minimize oxidant limitation  Journal Article
• Diversity and Stratification of Archaea in a Hypersaline Microbial Mat  Journal Article
• Diversity patterns of microbial eukaryotes mirror those of bacteria in Antarctic cryoconite holes  Journal Article
• Diversity, distribution and sources of bacteria in residential kitchens  Journal Article
• EFFECT OF LOCAL COMMUNITY PHYLOGENETIC STRUCTURE ON POLLEN LIMITATION IN AN OBLIGATELY INSECT-POLLINATED PLANT  Journal Article
• ENDOHELMINTHS IN BIRD HOSTS FROM NORTHERN CALIFORNIA AND AN ANALYSIS OF THE ROLE OF LIFE HISTORY TRAITS ON PARASITE RICHNESS  Journal Article
• EVOLUTIONARY DIVERSIFICATION OF REEF CORALS: A COMPARISON OF THE MOLECULAR AND FOSSIL RECORDS  Journal Article
• Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum  Journal Article
• Ectomycorrhizal-Dominated Boreal and Tropical Forests Have Distinct Fungal Communities, but Analogous Spatial Patterns across Soil Horizons  Journal Article
• Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples  Journal Article
• Effective Population Size Is Positively Correlated with Levels of Adaptive Divergence among Annual Sunflowers  Journal Article
• Environmental DNA sequencing primers for eutardigrades and bdelloid rotifers.  Journal Article
• Environmental harshness is positively correlated with intraspecific divergence in mammals and birds  Journal Article
• Evidence that chytrids dominate fungal communities in high-elevation soils  Journal Article
• Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography.  Journal Article
• Evolution of a behavior-linked microsatellite-containing element in the 5 ' flanking region of the primate AVPR1A gene  Journal Article
• Evolution of vertebrate gill covers via shifts in an ancient Pou3f3 enhancer  Journal Article
• Evolutionary Reconstructions of the Transferrin Receptor of Caniforms Supports Canine Parvovirus Being a Re-emerged and Not a Novel Pathogen in Dogs  Journal Article
• Evolutionary and ecological drivers of plant flavonoids across a large latitudinal gradient  Journal Article
• Evolutionary histories of soil fungi are reflected in their large-scale biogeography  Journal Article
• Evolutionary history of a vanishing radiation: isolation-dependent persistence and diversification in Pacific Island partulid tree snails  Journal Article
• Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes  Journal Article
• Examining the global distribution of dominant archaeal populations in soil  Journal Article
• Expression of a RecQ helicase homolog affects progression through crisis in fission yeast lacking telomerase  Journal Article
• Fatty Acid Content and Profile of the Novel Strain of Coccomyxa elongata (Trebouxiophyceae, Chlorophyta) Cultivated at Reduced Nitrogen and Phosphorus Concentrations(1)  Journal Article
• Filtering of target sequence capture individuals facilitates species tree construction in the plant subtribe Iochrominae (Solanaceae)  Journal Article
• Following Rapoport's Rule: the geographic range and genome size of bacterial taxa decline at warmer latitudes  Journal Article
• Fruit syndromes in Viburnum: correlated evolution of color, nutritional content, and morphology in bird-dispersed fleshy fruits  Journal Article
• Fumarole-Supported Islands of Biodiversity within a Hyperarid, High-Elevation Landscape on Socompa Volcano, Puna de Atacama, Andes  Journal Article
• Functional Authentication of a Novel Gastropod Gonadotropin-Releasing Hormone Receptor Reveals Unusual Features and Evolutionary Insight  Journal Article
• Functional Shifts in Unvegetated, Perhumid, Recently-Deglaciated Soils Do Not Correlate with Shifts in Soil Bacterial Community Composition  Journal Article
• Fungal diversity regulates plant-soil feedbacks in temperate grassland  Journal Article
• Gene regulatory evolution and the origin of macroevolutionary novelties: Insights from the neural crest  Journal Article
• Generation and Analysis of a Mouse Intestinal Metatranscriptome through Illumina Based RNA-Sequencing  Journal Article
• Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke  Journal Article
• Genome-Wide Identification and Expression of Xenopus F-Box Family of Proteins  Journal Article
• Genomic islands of divergence are not affected by geography of speciation in sunflowers  Journal Article
• Genus-wide acid tolerance accounts for the biogeographical distribution of soil Burkholderia populations  Journal Article
• Global Distribution of Polaromonas Phylotypes - Evidence for a Highly Successful Dispersal Capacity  Journal Article
• Global patterns in the biogeography of bacterial taxa  Journal Article
• Global phylogeography and ancient evolution of the widespread human gut virus crAssphage  Journal Article
• Global phylogeography of the scalloped hammerhead shark (Sphyrna lewini)  Journal Article
• Gogorevia, a New Monoraphid Diatom Genus for Achnanthes exigua and Allied Taxa (Achnanthidiaceae) Described on the Basis of an Integrated Molecular and Morphological Approach  Journal Article
• Gonadotropin-releasing hormone by any other name would smell as sweet  Journal Article
• Gonadotropin-releasing hormone in protostomes: Insights from functional studies on Aplysia californica  Journal Article
• Habitat filtering not dispersal limitation shapes oceanic island floras: species assembly of the Galapagos archipelago  Journal Article
• Harnessing the power of phylogenomics to disentangle the directionality and signatures of interkingdom host jumping in the parasitic fungal genus Tolypocladium  Journal Article
• Heliconius Butterflies Host Characteristic and Phylogenetically Structured Adult-Stage Microbiomes  Journal Article
• Hemolivia and Hepatozoon: Haemogregarines with Tangled Evolutionary Relationships  Journal Article
• Heterogeneity of Vaginal Microbial Communities within Individuals  Journal Article
• Hidden threat of tortoise ticks: high prevalence of Crimean-Congo haemorrhagic fever virus in ticks Hyalomma aegyptium in the Middle East  Journal Article
• High Throughput Sequencing Identifies Misregulated Genes in the Drosophila Polypyrimidine Tract-Binding Protein (hephaestus) Mutant Defective in Spermatogenesis  Journal Article
• High proportions of bacteria and archaea across most biomes remain uncultured  Journal Article
• High-Resolution Microbial Community Succession of Microbially Induced Concrete Corrosion in Working Sanitary Manholes  Journal Article
• Historic cycles of fragmentation and expansion in Parnassius smintheus (Papilionidae) inferred using mitochondrial DNA  Journal Article
• Historical and Current Perspectives on the Systematics of the 'Enigmatic' Diatom Genus Rhoicosphenia (Bacillariophyta), with Single and Multi-Molecular Marker and Morphological Analyses and Discussion on the Monophyly of 'Monoraphid' Diatoms  Journal Article
• Historical and ecological controls on phylogenetic diversity in Californian plant communities.  Journal Article
• Historical stocking data and 19th century DNA reveal human-induced changes to native diversity and distribution of cutthroat trout  Journal Article
• Host density drives the postglacial migration of the tree parasite, Epifagus virginiana  Journal Article
• How Many Species Have Mass M?  Journal Article
• How traits shape trees: new approaches for detecting character state-dependent lineage diversification  Journal Article
• Human Immunodeficiency Virus nef Signature Sequences Are Associated with Pulmonary Hypertension  Journal Article
• Hydrogen and bioenergetics in the Yellowstone geothermal ecosystem  Journal Article
• Identification of a Genomic Reservoir for New TRIM Genes in Primate Genomes  Journal Article
• Identification of a contact zone and hybridization for two subspecies of the American pika (Ochotona princeps) within a single protected area  Journal Article
• Identifying the microbial taxa that consistently respond to soil warming across time and space  Journal Article
• Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation  Journal Article
• Insights and inferences about integron evolution from genomic data  Journal Article
• Integron diversity in heavy-metal-contaminated mine tailings and inferences about integron evolution  Journal Article
• Investigation of factors affecting prediction of protein-protein interaction networks by phylogenetic profiling  Journal Article
• Is tetralogy true? Lack of support for the "one-to-four rule"  Journal Article
• Is there convergence of gut microbes in blood-feeding vertebrates?  Journal Article
• Lake microbial communities are resilient after a whole-ecosystem disturbance  Journal Article
• Latitude, elevational climatic zonation and speciation in New World vertebrates  Journal Article
• Leveraging single-cell genomics to expand the fungal tree of life  Journal Article
• Life at extreme elevations on Atacama volcanoes: the closest thing to Mars on Earth?  Journal Article
• Limited Phylogeographic Signal in Sex-Linked and Autosomal Loci Despite Geographically, Ecologically, and Phenotypically Concordant Structure of mtDNA Variation in the Holarctic Avian Genus Eremophila  Journal Article
• Major shifts in gut microbiota during development and its relationship to growth in ostriches  Journal Article
• Maternal-Fetal Conflict: Rapidly Evolving Proteins in the Rodent Placenta  Journal Article
• Mechanisms driving neural crest induction and migration in the zebrafish and Xenopus laevis  Journal Article
• Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome  Journal Article
• Microbial Communities of High-Elevation Fumaroles, Penitentes, and Dry Tephra "Soils" of the Puna de Atacama Volcanic Zone  Journal Article
• Microbial activity and diversity during extreme freeze-thaw cycles in periglacial soils, 5400 m elevation, Cordillera Vilcanota, PerA(0)  Journal Article
• Microbial aerosol liberation from soiled textiles isolated during routine residuals handling in a modern health care setting  Journal Article
• Microbial analyses of airborne dust collected from dormitory rooms predict the sex of occupants  Journal Article
• Microbial community analysis of rectal methanogens and sulfate reducing bacteria in two non-human primate species  Journal Article
• Microbial community succession in an unvegetated, recently deglaciated soil  Journal Article
• Microbial life at -13 degrees C in the brine of an ice-sealed Antarctic lake  Journal Article
• Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities  Journal Article
• Microevolutionary processes impact macroevolutionary patterns  Journal Article
• Molecular Evolution across the Asteraceae: Micro- and Macroevolutionary Processes  Journal Article
• Molecular Phylogeny of Amphora sensu lato (Bacillariophyta): An Investigation into the Monophyly and Classification of the Amphoroid Diatoms  Journal Article
• Molecular analysis of point-of-use municipal drinking water microbiology  Journal Article
• Molecular analysis of single room humidifier bacteriology  Journal Article
• Molecular cloning, expression pattern, and immunocytochemical localization of a gonadotropin-releasing hormone-like molecule in the gastropod mollusk, Aplysia californica  Journal Article
• Molecular identification of potential pathogens in water and air of a hospital therapy pool  Journal Article
• Molecular phylogeny of the diatom genera Amphora and Halamphora (Bacillariophyta) with a focus on morphological and ecological evolution  Journal Article
• Morphological, molecular, and ultrastructural characterization of Rozella rhizoclosmatii, a new species in Cryptomycota  Journal Article
• Morphology, Molecular Phylogeny, and Ecology of Binucleata daphniae n. g., n. sp (Fungi: Microsporidia), a Parasite of Daphnia magna Straus, 1820 (Crustacea: Branchiopoda)  Journal Article
• MotifCluster: an interactive online tool for clustering and visualizing sequences using shared motifs  Journal Article
• Multilocus approaches reveal underestimated species diversity and inter-specific gene flow in pikas (Ochotona) from southwestern China  Journal Article
• Multilocus phylogeny and coalescent species delimitation in Kotschy's gecko, Mediodactylus kotschyi: Hidden diversity and cryptic species  Journal Article
• Muscle fiber-type variation in lizards (Squamata) and phylogenetic reconstruction of hypothesized ancestral states  Journal Article
• Mutagenesis and comparative sequence analysis of a base triple joining the two domains of group I ribozymes  Journal Article
• NEW EARLY EOCENE ANAPTOMORPHINE PRIMATE (OMOMYIDAE) FROM THE WASHAKIE BASIN, WYOMING, WITH COMMENTS ON THE PHYLOGENY AND PALEOBIOLOGY OF ANAPTOMORPHINES  Journal Article
• Natural variation in gene expression between wild and weedy populations of Helianthus annuus  Journal Article
• New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes  Journal Article
• New physaloid fruit-fossil species from early Eocene South America  Journal Article
• Niche conservatism as an emerging principle in ecology and conservation biology  Journal Article
• Nitrogen deposition alters plant-fungal relationships: linking belowground dynamics to aboveground vegetation change  Journal Article
• Non-equilibrium dynamics and floral trait interactions shape extant angiosperm diversity  Journal Article
• Novel Tfap2-mediated control of soxE expression facilitated the evolutionary emergence of the neural crest  Journal Article
• Nucleotides Adjacent to the Ligand-Binding Pocket are Linked to Activity Tuning in the Purine Riboswitch  Journal Article
• Nutrient Addition Dramatically Accelerates Microbial Community Succession  Journal Article
• Nutrient limitation of soil microbial activity during the earliest stages of ecosystem development  Journal Article
• Ontogenetic variation in small-bodied New World primates: Implications for patterns of reproduction and infant care  Journal Article
• Ontogeny and phylogeny in papionin primates  Journal Article
• Origin of African Physacanthus (Acanthaceae) via Wide Hybridization  Journal Article
• Origins and consequences of serpentine endemism in the California flora.  Journal Article
• PHYLOGENETIC-RELATIONSHIPS AND ALTERED GENOME STRUCTURES AMONG TETRAHYMENA MITOCHONDRIAL DNAS  Journal Article
• Paralogy and orthology of tyrosine kinases that can extend the life span of Caenorhabditis elegans  Journal Article
• Patterns of diversity for fungal assemblages of biological soil crusts from the southwestern United States  Journal Article
• Pelvis of Gargoyleosaurus (Dinosauria: Ankylosauria) and the Origin and Evolution of the Ankylosaur Pelvis  Journal Article
• Perils of paralogy: Using HSP70 genes for inferring organismal phylogenies  Journal Article
• Phenotypic analysis of separation-of-function alleles of MEI-41, Drosophila ATM/ATR  Journal Article
• Phenotypic differentiation is associated with divergent sexual selection among closely related barn swallow populations  Journal Article
• Phototrophic Phylotypes Dominate Mesothermal Microbial Mats Associated with Hot Springs in Yellowstone National Park  Journal Article
• Phylogenetic Relationships and Functional Genes: Distribution of a Gene (mnxG) Encoding a Putative Manganese-Oxidizing Enzyme in Bacillus Species  Journal Article
• Phylogenetic and ecological factors impact the gut microbiota of two Neotropical primate species  Journal Article
• Phylogenetic approach to the evolution of color term systems  Journal Article
• Phylogenetic approaches for describing and comparing the diversity of microbial communities  Journal Article
• Phylogenetic conservation of disulfide-linked, dimeric acetylcholine receptor pentamers in southern ocean electric rays  Journal Article
• Phylogenetic conservatism in plant-soil feedback and its implications for plant abundance.  Journal Article
• Phylogenetic diversity and ecology of environmental Archaea  Journal Article
• Phylogenetic placement of the ectomycorrhizal genus Cenococcum in Gloniaceae (Dothideomycetes)  Journal Article
• Phylogenetic relationships among the Notharctinae of North America.  Journal Article
• Phylogenetic relationships of Deprea: New insights into the evolutionary history of physaloid groups  Journal Article
• Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat  Journal Article
• Phylogenetic-comparative analysis of the eukaryal ribonuclease P RNA  Journal Article
• Phylogenetics is the New Genetics (for Most of Biodiversity)  Journal Article
• Phylogenomics reveals convergent evolution of red-violet coloration in land plants and the origins of the anthocyanin biosynthetic pathway  Journal Article
• Phylogeny and Ecophysiology of Opportunistic "Snow Molds" from a Subalpine Forest Ecosystem  Journal Article
• Phylogeny and biogeography of South American marsh pitcher plant genus Heliamphora (Sarraceniaceae) endemic to the Guiana Highlands  Journal Article
• Phylogeny and biogeography of an uncultured clade of snow chytrids  Journal Article
• Phylogeny of elasmobranchs based on LSU and SSU ribosomal RNA genes  Journal Article
• Phylogeny of hammerhead sharks (Family Sphyrnidae) inferred from mitochondrial and nuclear genes  Journal Article
• Phylogeny of the genus Hirundo and the Barn Swallow subspecies complex  Journal Article
• Phylogeny, niche conservatism and the latitudinal diversity gradient in mammals  Journal Article
• Phylogeography of microbial phototrophs in the dry valleys of the high Himalayas and Antarctica  Journal Article
• Plant diversity and density predict belowground diversity and function in an early successional alpine ecosystem  Journal Article
• Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints  Journal Article
• Population Genetics and Morphological Comparisons of Migratory European (Hirundo rustica rustica) and Sedentary East-Mediterranean (Hirundo rustica transitiva) Barn Swallows  Journal Article
• Population genetic structure of the thick-tailed bushbaby (Otolemur crassicaudatus) from the Soutpansberg Mountain range, Northern South Africa, based on four mitochondrial DNA regions  Journal Article
• Positive selection of yeast nonhomologous end-joining genes and a retrotransposon conflict hypothesis  Journal Article
• Pre-oral gut contributes to facial structures in non-teleost fishes  Journal Article
• Predicting the structure of soil communities from plant community taxonomy, phylogeny, and traits  Journal Article
• Primate vaginal microbiomes exhibit species specificity without universal Lactobacillus dominance  Journal Article
• PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers  Journal Article
• Quantification of Gordona amarae strains in foaming activated sludge and anaerobic digester systems with oligonucleotide hybridization probes  Journal Article
• Rampant gene exchange across a strong reproductive barrier between the annual sunflowers, Helianthus annuus and H-petiolaris  Journal Article
• Recapitulation of human betaB1-crystallin promoter activity in transgenic zebrafish.  Journal Article
• Recurrent positive selection at bgcn, a key determinant of germ line differentiation, does not appear to be driven by simple coevolution with its partner protein bam.  Journal Article
• Reductions in complexity of mitochondrial genomes in lichen-forming fungi shed light on genome architecture of obligate symbioses  Journal Article
• Regional endemism and cryptic species revealed by molecular and morphological analysis of a widespread species of Neotropical catfish  Journal Article
• Repeated evolution of a morphological novelty: a phylogenetic analysis of the inflated fruiting calyx in the Physalideae tribe (Solanaceae)  Journal Article
• Reshaping Darwin's Tree: Impact of the Symbiome  Journal Article
• Reversing time: Origin of telomerase  Journal Article
• Robust sequence selection method used to develop the FluChip diagnostic microarray for influenza virus  Journal Article
• SOX7 is an immediate-early target of VegT and regulates Nodal-related gene expression in Xenopus  Journal Article
• SPECIES SELECTION AND THE MACROEVOLUTION OF CORAL COLONIALITY AND PHOTOSYMBIOSIS  Journal Article
• Schizosaccharomyces pombe mst2(+) encodes a MYST family histone acetyltransferase that negatively regulates telomere silencing  Journal Article
• Seasonal changes in an alpine soil bacterial community in the Colorado Rocky Mountains  Journal Article
• Seasonal dynamics of previously unknown fungal lineages in tundra soils  Journal Article
• Sexual selection accelerates signal evolution during speciation in birds  Journal Article
• Shedding light: a phylotranscriptomic perspective illuminates the origin of photosymbiosis in marine bivalves  Journal Article
• Short-term temporal variability in airborne bacterial and fungal populations  Journal Article
• Single-Stranded DNA Viruses in Antarctic Cryoconite Holes  Journal Article
• Slow worm, Anguis fragilis (Reptilia: Anguidae) as a species complex: Genetic structure reveals deep divergences  Journal Article
• Soil CO2 flux and photoautotrophic community composition in high-elevation, 'barren' soil  Journal Article
• Spatial autocorrelation of microbial communities atop a debris-covered glacier is evidence of a supraglacial chronosequence  Journal Article
• Spatial variation in Streptomyces genetic composition and diversity in a prairie soil  Journal Article
• Species-level diversification of African dwarf crocodiles (Genus Osteolaemus): A geographic and phylogenetic perspective  Journal Article
• Species-specific vulnerability of RanBP2 shaped the evolution of SIV as it transmitted in African apes  Journal Article
• Stable association between strains of Mycobacterium tuberculosis and their human host populations  Journal Article
• Structural basis for diversity in the SAM clan of riboswitches  Journal Article
• Structural insights into the signal recognition particle  Journal Article
• Structure, inter-annual recurrence, and global-scale connectivity of airborne microbial communities  Journal Article
• Subsurface microbial diversity in deep-granitic-fracture water in Colorado  Journal Article
• Sunflower domestication alleles support single domestication center in eastern North America  Journal Article
• TELOMERASE RNAS OF DIFFERENT CILIATES HAVE A COMMON SECONDARY STRUCTURE AND A PERMUTED TEMPLATE  Journal Article
• THE GENERATION AND MAINTENANCE OF DIVERSITY IN MICROBIAL COMMUNITIES  Journal Article
• Taxonomical developments in the family Polyomaviridae  Journal Article
• Telomerase catalytic subunit homologs from fission yeast and human  Journal Article
• Telomerase reverse transcriptase genes identified in Tetrahymena thermophila and Oxytricha trifallax  Journal Article
• Temporal variability is a personalized feature of the human microbiome  Journal Article
• Testing for differentiation of microbial communities using phylogenetic methods: Accounting for uncertainty of phylogenetic inference and character state mapping  Journal Article
• Testis-specific murine centrin, Cetn1: Genomic characterization and evidence for retroposition of a gene encoding a centrosome protein  Journal Article
• The Arabidopsis AAA ATPase SKD1 is involved in multivesicular endosome function and interacts with its positive regulator LYST-INTERACTING PROTEIN5  Journal Article
• The Biogeography of Ammonia-Oxidizing Bacterial Communities in Soil  Journal Article
• The Burden of Dengue Fever and Chikungunya in Southern Coastal Ecuador: Epidemiology, Clinical Presentation, and Phylogenetics from the First Two Years of a Prospective Study  Journal Article
• The Dlx gene complement of the leopard shark, Triakis semifasciata, resembles that of mammals: Implications for genomic and morphological evolution of jawed vertebrates  Journal Article
• The Emergence and Loss of Gonadotropin-Releasing Hormone in Protostomes: Orthology, Phylogeny, Structure, and Function  Journal Article
• The Evolution and Genetics of Carotenoid Processing in Animals  Journal Article
• The Evolution of Maximum Body Size of Terrestrial Mammals  Journal Article
• The Evolution of Stomach Acidity and Its Relevance to the Human Microbiome  Journal Article
• The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster  Journal Article
• The Hawaiian freshwater algae biodiversity survey (2009-2014): systematic and biogeographic trends with an emphasis on the macroalgae  Journal Article
• The Rcs phosphorelay system is specific to enteric pathogens/commensals and activates ydeI, a gene important for persistent Salmonella infection of mice  Journal Article
• The amphioxus SoxB family: Implications for the evolution of vertebrate placodes  Journal Article
• The amphioxus genome illuminates vertebrate origins and cephalochordate biology  Journal Article
• The complete chloroplast genomes of Cannabis sativa and Humulus lupulus  Journal Article
• The complete mitochondrial genome of the Warm Springs pupfish, Cyprinodon nevadensis pectoralis  Journal Article
• The conserved RNA recognition motif 3 of U2 snRNA auxiliary factor (U2AF(65)) is essential in vivo but dispensable for activity in vitro  Journal Article
• The deuterostome context of chordate origins  Journal Article
• The draft genome of Ruellia speciosa (Beautiful Wild Petunia: Acanthaceae).  Journal Article
• The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves  Journal Article
• The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling  Journal Article
• The genome of the truffle-parasite Tolypocladium ophioglossoides and the evolution of antifungal peptaibiotics  Journal Article
• The geography and ecology of plant speciation: range overlap and niche divergence in sister species.  Journal Article
• The gut microbiome of nonhuman primates: Lessons in ecology and evolution  Journal Article
• The phylogenetic placement of Chondrichthyes: inferences from analysis of multiple genes and implications for comparative studies  Journal Article
• The phylogenetic placement of hypocrealean insect pathogens in the genus Polycephalomyces: An application of One Fungus One Name  Journal Article
• The phylogenetic relationships of the extant pelicans inferred from DNA sequence data  Journal Article
• The rate and pattern of cladogenesis in microbes  Journal Article
• The rate of telomere loss is related to maximum lifespan in birds  Journal Article
• The role of the bidirectional hydrogenase in cyanobacteria  Journal Article
• The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements  Journal Article
• The topology of the bacterial co-conserved protein network and its implications for predicting protein function  Journal Article
• Toward an ecological classification of soil bacteria  Journal Article
• Towards a unified paradigm for sequence-based identification of fungi  Journal Article
• Transposon fingerprinting using low coverage whole genome shotgun sequencing in Cacao (Theobroma cacao L.) and related species  Journal Article
• Triple-helix structure in telomerase RNA contributes to catalysis  Journal Article
• Triton's trident: cryptic Neogene divergences in a marine clam (Lasaea australis) correspond to Australia's three temperate biogeographic provinces  Journal Article
• Ulcerative disease outbreak in crayfish Orconectes propinquus linked to Saprolegnia australis in Big Muskellunge Lake, Wisconsin  Journal Article
• UniFrac: an effective distance metric for microbial community comparison  Journal Article
• Unlinked rRNA genes are widespread among bacteria and archaea  Journal Article
• Use of De Novo Transcriptome Libraries to Characterize a Novel Oleaginous Marine Chlorella Species during the Accumulation of Triacylglycerols  Journal Article
• Using coalescent simulations to test the impact of quaternary climate cycles on divergence in an alpine plant-insect association  Journal Article
• Using null models to infer microbial co-occurrence networks  Journal Article
• Using the nucleotide substitution rate matrix to detect horizontal gene transfer  Journal Article
• West Nile Virus Prevalence in Wild Birds from Mexico  Journal Article
• When and where plant-soil feedback may promote plant coexistence: a meta-analysis  Journal Article
• Why are some microbes more ubiquitous than others? Predicting the habitat breadth of soil bacteria  Journal Article
• Widespread flower color convergence in Solanaceae via alternate biochemical pathways  Journal Article
• Widespread occurrence and phylogenetic placement of a soil clone group adds a prominent new branch to the fungal tree of life  Journal Article
• Zebraf ish fgf24 functions with fgf8 to promote posterior mesodermal development  Journal Article
• Zebrafish dentition in comparative context  Journal Article

broader concept

• Biological Phenomena - Biological Evolution  PubMed MeSh Term