Molecular Conformation - Nucleic Acid Conformation
PubMed MeSh Term
Overview
subject area of
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3'-terminal labelling of RNA with T4 RNA ligase. Journal Article
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3-DIMENSIONAL MODEL OF THE ACTIVE-SITE OF THE SELF-SPLICING RIBOSOMAL-RNA PRECURSOR OF TETRAHYMENA Journal Article
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Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA Journal Article
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In Crystallo Selection to Establish New RNA Crystal Contacts Journal Article
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Trans-splicing Journal Article
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A COMPARISON OF 2 PHAGE COAT PROTEIN RNA INTERACTIONS Journal Article
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A CONSERVED BASE PAIR WITHIN HELIX-P4 OF THE TETRAHYMENA RIBOZYME HELPS TO FORM THE TERTIARY STRUCTURE REQUIRED FOR SELF-SPLICING Journal Article
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A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch Journal Article
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A HAMMERHEAD RIBOZYME ALLOWS SYNTHESIS OF A NEW FORM OF THE TETRAHYMENA RIBOZYME HOMOGENEOUS IN LENGTH WITH A 3' END BLOCKED FOR TRANSESTERIFICATION Journal Article
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A Highly Coupled Network of Tertiary Interactions in the SAM-I Riboswitch and Their Role in Regulatory Tuning Journal Article
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A KINETIC AND THERMODYNAMIC FRAMEWORK FOR THE HAMMERHEAD RIBOZYME REACTION Journal Article
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A POSITIVE ENTROPY CHANGE FOR GUANOSINE BINDING AND FOR THE CHEMICAL STEP IN THE TETRAHYMENA RIBOZYME REACTION Journal Article
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A Positive Spin on the Centromere Journal Article
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A Redox-Reversible Switch of DNA Hydrogen Bonding and Structure. Journal Article
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A SELF-SPLICING GROUP-I INTRON IN THE NUCLEAR PRE-RIBOSOMAL-RNA OF THE GREEN-ALGA, ANKISTRODESMUS-STIPITATUS Journal Article
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A SMALL METALLORIBOZYME WITH A 2-STEP MECHANISM Journal Article
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A SPECIFIC, UV-INDUCED RNA PROTEIN CROSS-LINK USING 5-BROMOURIDINE-SUBSTITUTED RNA Journal Article
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A Structural Basis for the Recognition of 2′-Deoxyguanosine by the Purine Riboswitch Journal Article
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A TERTIARY INTERACTION IN THE TETRAHYMENA INTRON CONTRIBUTES TO SELECTION OF THE 5' SPLICE-SITE Journal Article
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A TETRAHYMENA INTRON NUCLEOTIDE CONNECTED TO THE GTP ARGININE SITE Journal Article
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A charged and contoured surface on the nucleosome regulates chromatin compaction Journal Article
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A coat for all sequences Journal Article
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A conformational change in the catalytic core of the hammerhead ribozyme upon cleavage of an RNA substrate Journal Article
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A covalent crosslink converts the hammerhead ribozyme from a ribonuclease to an RNA ligase Journal Article
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A functional genetic screen reveals sequence preferences within a key tertiary interaction in cobalamin riboswitches required for ligand selectivity Journal Article
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A general method for rapid and nondenaturing purification of RNAs Journal Article
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A general strategy to solve the phase problem in RNA crystallography Journal Article
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A kinetic and thermodynamic analysis of cleavage site mutations in the hammerhead ribozyme Journal Article
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A network of heterogeneous hydrogen bonds in GNRA tetraloops Journal Article
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A new assay for tRNA aminoacylation kinetics Journal Article
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A preorganized active site in the crystal structure of the Tetrahymena ribozyme Journal Article
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A quantitative study of the flexibility contributed to RNA structures by nicks and single-stranded gaps Journal Article
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A re-investigation of the thio effect at the hammerhead cleavage site Journal Article
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A specific RNA structural motif mediates high affinity binding by the HIV-1 nucleocapsid protein (NCp7) Journal Article
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A stem-loop of Tetrahymena telomerase RNA distant from the template potentiates RNA folding and telomerase activity Journal Article
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A switch in time: Detailing the life of a riboswitch Journal Article
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A thermodynamic analysis of the sequence-specific binding of RNA by bacteriophage MS2 coat protein Journal Article
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A universal mode of helix packing in RNA Journal Article
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ALTERNATIVE SECONDARY STRUCTURES IN THE 5' EXON AFFECT BOTH FORWARD AND REVERSE SELF-SPLICING OF THE TETRAHYMENA INTERVENING SEQUENCE RNA Journal Article
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AMINOACYL ESTERASE-ACTIVITY OF THE TETRAHYMENA RIBOZYME Journal Article
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AN IMPORTANT RNA TERTIARY INTERACTION OF GROUP-I AND GROUP-II INTRONS IS IMPLICATED IN GRAM-POSITIVE RNASE-P RNAS Journal Article
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AN INDEPENDENTLY FOLDING DOMAIN OF RNA TERTIARY STRUCTURE WITHIN THE TETRAHYMENA RIBOZYME Journal Article
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AN RNA MUTATION THAT INCREASES THE AFFINITY OF AN RNA PROTEIN-INTERACTION Journal Article
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AN RNA-PROTEIN CONTACT DETERMINED BY 5-BROMOURIDINE SUBSTITUTION, PHOTO-CROSS-LINKING AND SEQUENCING Journal Article
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AN ULTRAVIOLET LIGHT-INDUCED CROSS-LINK IN YEAST TRANSFER RNAPHE Journal Article
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AN ULTRAVIOLET-INDUCIBLE ADENOSINE ADENOSINE CROSS-LINK REFLECTS THE CATALYTIC STRUCTURE OF THE TETRAHYMENA RIBOZYME Journal Article
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ANALYSIS OF THE STRUCTURE OF TETRAHYMENA NUCLEAR RNAS IN-VIVO - TELOMERASE RNA, THE SELF-SPLICING RIBOSOMAL-RNA INTRON, AND U2 SNRNA Journal Article
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ANTIBODIES SPECIFIC FOR BRANCHED RIBONUCLEIC-ACIDS Journal Article
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AUTOCATALYTIC CYCLIZATION OF AN EXCISED INTERVENING SEQUENCE RNA IS A CLEAVAGE LIGATION REACTION Journal Article
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AUTOGENOUS REGULATORY SITE ON THE BACTERIOPHAGE-T4 GENE-32 MESSENGER-RNA Journal Article
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AUTOGENOUS TRANSLATIONAL OPERATOR RECOGNIZED BY BACTERIOPHAGE-T4 DNA-POLYMERASE Journal Article
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Active site dynamics in the lead-dependent ribozyme Journal Article
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Activity and thermostability of the small self-splicing group I intron in the pre-tRNA(IIe) of the purple bacterium Azoarcus Journal Article
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Adaptive Ligand Binding by the Purine Riboswitch in the Recognition of Guanine and Adenine Analogs Journal Article
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Alanine scanning of MS2 coat protein reveals protein-phosphate contacts involved in thermodynamic hot spots. Journal Article
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Ambivalent Incorporation of the Fluorescent Cytosine Analogues tC and tCo by Human DNA Polymerase α and Klenow Fragment Journal Article
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Aminoacylation of anticodon loop substituted yeast tyrosine transfer RNA. Journal Article
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An 8 nt RNA triggers a rate-limiting shift of RNA polymerase II complexes into elongation Journal Article
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An RNA internal loop acts as a hinge to facilitate ribozyme folding and catalysis Journal Article
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An early transition state for folding of the P4-P6 RNA domain Journal Article
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Archaea: The Final Frontier of Chromatin Journal Article
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Assembly of a ribonucleoprotein catalyst by tertiary structure capture Journal Article
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Atomic level architecture of group I introns revealed Journal Article
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B12 cofactors directly stabilize an mRNA regulatory switch Journal Article
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BASE SUBSTITUTION MUTANTS OF THE LAC OPERATOR - INVIVO AND INVITRO AFFINITIES FOR LAC REPRESSOR Journal Article
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BINDING OF THE CBP2 PROTEIN TO A YEAST MITOCHONDRIAL GROUP-I INTRON REQUIRES THE CATALYTIC CORE OF THE RNA Journal Article
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BIOCHEMICAL AND PHYSICAL CHARACTERIZATION OF AN UNMODIFIED YEAST PHENYLALANINE TRANSFER-RNA TRANSCRIBED INVITRO Journal Article
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BIOLOGICAL CATALYSIS BY RNA Journal Article
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Backbone-free duplex-stacked monomer nucleic acids exhibiting Watson-Crick selectivity Journal Article
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Backtracked and paused transcription initiation intermediate of Escherichia coli RNA polymerase Journal Article
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Base and sugar requirements for RNA cleavage of essential nucleoside residues in internal loop B of the hairpin ribozyme: Implications for secondary structure Journal Article
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Bending and looping of long DNA by Polycomb repressive complex 2 revealed by AFM imaging in liquid Journal Article
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Bent pseudoknots and novel RNA inhibitors of type 1 human immunodeficiency virus (HIV-1) reverse transcriptase Journal Article
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Binding of europium(III) ions to RNA stem loops: Role of the primary hydration sphere in complex formation Journal Article
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Binding of misacylated tRNAs to the ribosomal A site. Journal Article
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Binding of the protein kinase PKR to RNAs with secondary structure defects: Role of the tandem A-G mismatch and noncontiguous helixes Journal Article
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Biophysical analysis and small-angle X-ray scattering-derived structures of MeCP2-nucleosome complexes Journal Article
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CATALYSIS OF RNA CLEAVAGE BY A RIBOZYME DERIVED FROM THE GROUP-I INTRON OF ANABAENA PRE-TRNA(LEU) Journal Article
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CHARACTERIZATION OF 2 RNA-CATALYZED RNA CLEAVAGE REACTIONS Journal Article
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CHARACTERIZATION OF A G-QUARTET FORMATION REACTION PROMOTED BY THE BETA-SUBUNIT OF THE OXYTRICHA TELOMERE-BINDING PROTEIN Journal Article
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CHARACTERIZATION OF RNA HAIRPIN LOOP STABILITY Journal Article
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CHROMATIN STRUCTURE OF THE RIBOSOMAL-RNA GENES OF TETRAHYMENA-THERMOPHILA AS ANALYZED BY TRIMETHYLPSORALEN CROSSLINKING INVIVO Journal Article
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CIRCULARLY PERMUTED TRANSFER-RNAS AS SPECIFIC PHOTOAFFINITY PROBES OF RIBONUCLEASE-P RNA STRUCTURE Journal Article
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COAXIALLY STACKED RNA HELICES IN THE CATALYTIC CENTER OF THE TETRAHYMENA RIBOZYME Journal Article
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CONSERVED SEQUENCES AND STRUCTURES OF GROUP-I INTRONS - BUILDING AN ACTIVE-SITE FOR RNA CATALYSIS - A REVIEW Journal Article
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COOPERATIVE BINDING OF R17 COAT PROTEIN TO RNA Journal Article
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CUUCGG HAIRPINS - EXTRAORDINARILY STABLE RNA SECONDARY STRUCTURES ASSOCIATED WITH VARIOUS BIOCHEMICAL PROCESSES Journal Article
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Catalytic diversity of extended hammerhead ribozymes. Journal Article
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Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription Journal Article
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Chemical and enzymatic synthesis of tRNAs for high-throughput crystallization Journal Article
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Chemical shift as a probe of molecular interfaces: NMR studies of DNA binding by the three amino-terminal zinc finger domains from transcription factor IIIA. Journal Article
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Chiral histidine selection by D-ribose RNA Journal Article
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Circular RNAs: diversity of form and function Journal Article
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Circular dichroism study of nine species of transfer ribonucleic acid. Journal Article
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Click Nucleic Acid-DNA Binding Behavior: Dependence on Length, Sequence, and Ionic Strength Journal Article
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Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: delineation of a novel sub-family of bacterial DEAD proteins Journal Article
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Comparison of alignment tensors generated for native tRNA(Val) using magnetic fields and liquid crystalline media Journal Article
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Comparison of crystal structure interactions and thermodynamics for stabilizing mutations in the Tetrahymena ribozyme Journal Article
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Comparison of the global structure and dynamics of native and unmodified tRNA Journal Article
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Comparison of the hammerhead cleavage reactions stimulated by monovalent and divalent cations Journal Article
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Complementary oligonucleotide binding to transfer RNA. Journal Article
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Computational analysis of noncoding RNAs Journal Article
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Conformational properties of oligonucleotides. Journal Article
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Conformational switches involved in orchestrating the successive steps of group I RNA splicing Journal Article
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Connecting Rare DNA Conformations and Surface Dynamics Using Single-Molecule Resonance Energy Transfer Journal Article
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Context-dependence of T-loop Mediated Long-range RNA Tertiary Interactions Journal Article
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Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites. Journal Article
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Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA Journal Article
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Correlation of the guanosine exchangeable and nonexchangeable base protons in C-13-(IN)-N-15-labeled RNA with an HNC-TOCSY-CH experiment Journal Article
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Crystal structure of NFAT bound to the HIV-1 LTR tandem κB enhancer element Journal Article
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Crystal structure of a bacterial ribonuclease P RNA Journal Article
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Crystal structure of a group I ribozyme domain: Principles of RNA packing Journal Article
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Crystal structure of a nucleosome core particle containing the variant histone H2A.Z Journal Article
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Crystal structure of epidoxorubicin-formaldehyde virtual crosslink of DNA and evidence for its formation in human breast-cancer cells Journal Article
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Crystal structure of the lysine riboswitch regulatory mRNA element Journal Article
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Crystal structure of the nucleosome core particle at 2.8 angstrom resolution Journal Article
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Crystal structure of the ribonucleoprotein core of the signal recognition particle Journal Article
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Crystal structures of nucleosome core particles in complex with minor groove DNA-binding ligands Journal Article
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Crystals by design: A strategy for crystallization of a ribozyme derived from the Tetrahymena group I intron Journal Article
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DEFINING A SMALLER RNA SUBSTRATE FOR ELONGATION-FACTOR TU Journal Article
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DEFINING THE INSIDE AND OUTSIDE OF A CATALYTIC RNA MOLECULE Journal Article
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DELETION OF NONCONSERVED HELICES NEAR THE 3' END OF THE RIBOSOMAL-RNA INTRON OF TETRAHYMENA-THERMOPHILA ALTERS SELF-SPLICING BUT NOT CORE CATALYTIC ACTIVITY Journal Article
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DETECTION OF DELETIONS IN THE MITOCHONDRIAL GENOME OF CAENORHABDITIS-ELEGANS Journal Article
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DETECTION OF ESCHERICHIA-COLI RIBOSOME BINDING AT TRANSLATION INITIATION SITES IN THE ABSENCE OF TRANSFER-RNA Journal Article
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DETERMINATION OF DNA STRUCTURES BY NMR AND DISTANCE GEOMETRY TECHNIQUES - A COMPUTER-SIMULATION Journal Article
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DETERMINATION OF RECOGNITION NUCLEOTIDES FOR ESCHERICHIA-COLI PHENYLALANYL-TRANSFER RNA-SYNTHETASE Journal Article
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DETERMINING LOCAL CONFORMATIONAL VARIATIONS IN DNA - NUCLEAR-MAGNETIC-RESONANCE STRUCTURES OF THE DNA DUPLEXES D(CGCCTAATCG) AND D(CGTCACGCGC) GENERATED USING BACK-CALCULATION OF THE NUCLEAR OVERHAUSER EFFECT SPECTRA, A DISTANCE GEOMETRY ALGORITHM AND CONSTRAINED MOLECULAR-DYNAMICS Journal Article
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DIRECT OBSERVATION OF TUBE-LIKE MOTION OF A SINGLE POLYMER-CHAIN Journal Article
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DISTINGUISHING BETWEEN DUPLEX AND HAIRPIN FORMS OF RNA BY N-15-H-1 HETERONUCLEAR NMR Journal Article
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DNA BIOCHEMISTRY - G-STRINGS AT CHROMOSOME ENDS Journal Article
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DNA Hairpin Stabilization on a Hydrophobic Surface Journal Article
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DNA binding within the nucleosome core Journal Article
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DNA self-recognition in the structure of Pot1 bound to telomeric single-stranded DNA. Journal Article
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DNA-POLYMERASE OF BACTERIOPHAGE-T4 IS AN AUTOGENOUS TRANSLATIONAL REPRESSOR Journal Article
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DNMT1 inhibition by pUG-fold quadruplex RNA. Journal Article
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DOMAINS OF INITIATOR TRANSFER-RNA AND INITIATION CODON CRUCIAL FOR INITIATOR TRANSFER-RNA SELECTION BY ESCHERICHIA-COLI IF3 Journal Article
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DUAL TRANSLATIONAL INITIATION SITES CONTROL FUNCTION OF THE LAMBDA-S GENE Journal Article
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Deciphering the mechanism of thermodynamic accommodation of telomeric oligonucleotide sequences by the Schizosaccharomyces pombe protection of telomeres 1 (Pot1pN) protein Journal Article
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Delivering DNA from photocrosslinked, surface eroding polyanhydrides Journal Article
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Determining structures of RNA aptamers and riboswitches by X-ray crystallography. Journal Article
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Different aa-tRNAs are selected uniformly on the ribosome. Journal Article
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Discrimination between Closely Related Cellular Metabolites by the SAM-I Riboswitch Journal Article
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Docking kinetics and equilibrium of a GAAA tetra loop-receptor motif probed by single-molecule FRET Journal Article
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Domain packing and dynamics in the DNA complex of the N-terminal zinc fingers of TFIIIA. Journal Article
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Dynamical Disorder in the DNA Hydration Shell Journal Article
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EFFECT OF MONOVALENT CATION-INDUCED TELOMERIC DNA-STRUCTURE ON THE BINDING OF OXYTRICHA TELOMERIC PROTEIN Journal Article
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EFFICIENT PROTEIN-FACILITATED SPLICING OF THE YEAST MITOCHONDRIAL BI5 INTRON Journal Article
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ELECTRON-MICROSCOPIC STUDY OF MOUSE FOLDBACK DNA Journal Article
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ESCHERICHIA-COLI TRANSLATIONAL INITIATION FACTOR-IF3 - A UNIQUE CASE OF TRANSLATIONAL REGULATION Journal Article
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Editorial overview: Nucleic acid movers and shakers Journal Article
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Effects of divalent metal ions on individual steps of the Tetrahymena ribozyme reaction Journal Article
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Effects of nucleotide analogues on Euplotes aediculatus telomerase processivity: Evidence for product-assisted translocation Journal Article
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Effects of polyvalent cations on the folding of an rRNA three-way junction and binding of ribosomal protein S15 Journal Article
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Efficient Detection of Hydrogen Bonds in Dynamic Regions of RNA by Sensitivity-Optimized NMR Pulse Sequences Journal Article
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Efficient ligation of the Schistosoma hammerhead ribozyme Journal Article
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Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints Journal Article
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Elasticity of short DNA molecules:: Theory and experiment for contour lengths of 0.6-7 μm Journal Article
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End-to-end stacking and liquid crystal condensation of 6-to 20-base pair DNA duplexes Journal Article
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Energetics and cooperativity of tertiary hydrogen bonds in RNA structure Journal Article
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Enhanced Raman signals from switchable nanoparticle probes Journal Article
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Enhanced detection of tRNA isoacceptors by combinatorial oligonucleotide hybridization Journal Article
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Entropy of water in the hydration layer of major and minor grooves of DNA Journal Article
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Escherichia coli DNA polymerase III holoenzyme footprints three helical turns of its primer. Journal Article
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Escherichia coli DbpA is a 3' --> 5' RNA helicase. Journal Article
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Euplotes telomerase: Evidence for limited base-pairing during primer elongation and dGTP as an effector of translocation Journal Article
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Evaluation and refinement of tmRNA structure using gene sequences from natural microbial communities Journal Article
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Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction Journal Article
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Evolution of Tetrahymena ribozyme mutants with increased structural stability Journal Article
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Exocyclic amine of the conserved G center dot U pair at the cleavage site of the Tetrahymena ribozyme contributes to 5'-splice site selection and transition state stabilization Journal Article
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FOLDING OF CIRCULARLY PERMUTED TRANSFER-RNAS Journal Article
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FOLDING OF GROUP-I INTRONS FROM BACTERIOPHAGE-T4 INVOLVES INTERNALIZATION OF THE CATALYTIC CORE Journal Article
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FREE-ENERGY CONTRIBUTIONS OF G.U AND OTHER TERMINAL MISMATCHES TO HELIX STABILITY Journal Article
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Forward and reverse motion of single RecBCD molecules on DNA Journal Article
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Free State Conformational Sampling of the SAM-I Riboswitch Aptamer Domain Journal Article
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From oligonucleotide shapes to genomic SELEX: Novel biological regulatory loops Journal Article
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Functional consequences of T-stem mutations in E. coli tRNAThrUGU in vitro and in vivo. Journal Article
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Functional crosstalk between exon enhancers, polypyrimidine tracts and branchpoint sequences. Journal Article
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Functional groups on the cleavage site pyrimidine nucleotide are required for stabilization of the hammerhead transition state Journal Article
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Functionalized Tricyclic Cytosine Analogues Provide Nucleoside Fluorophores with Improved Photophysical Properties and a Range of Solvent Sensitivities Journal Article
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GAAA TETRALOOP AND CONSERVED BULGE STABILIZE TERTIARY STRUCTURE OF A GROUP-I INTRON DOMAIN Journal Article
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GNRA TETRALOOPS MAKE A U-TURN Journal Article
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GUANOSINE MODIFICATIONS IN RUNOFF TRANSCRIPTS OF SYNTHETIC TRANSFER RNA-PHE GENES MICROINJECTED INTO XENOPUS OOCYTES Conference Proceeding
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Genome-wide measurement of RNA secondary structure in yeast Journal Article
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Global expression changes resulting from loss of telomeric DNA in fission yeast Journal Article
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HAMMERHEAD .2. Journal Article
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HIGH-AFFINITY SSDNA INHIBITORS OF THE REVERSE-TRANSCRIPTASE OF TYPE-1 HUMAN-IMMUNODEFICIENCY-VIRUS Journal Article
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HIGH-RESOLUTION MOLECULAR DISCRIMINATION BY RNA Journal Article
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Hammerhead cleavage of the phosphorodithioate linkage Journal Article
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Hammerhead redux: does the new structure fit the old biochemical data? Journal Article
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Hammerhead ribozyme kinetics Journal Article
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Hammerhead ribozymes with a faster cleavage rate Journal Article
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Hammerhead: Part 2. Journal Article
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Hammerheads derived from sTRSV show enhanced cleavage and ligation rate constants. Journal Article
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High pressure single-molecule FRET studies of the lysine riboswitch: cationic and osmolytic effects on pressure induced denaturation Journal Article
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High-Precision Single-Molecule Characterization of the Folding of an HIV RNA Hairpin by Atomic Force Microscopy Journal Article
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High-resolution pyrimidine- and ribose-specific 4D HCCH-COSY spectra of RNA using the filter diagonalization method Journal Article
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Histone chaperones and nucleosome assembly Journal Article
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Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock Journal Article
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Human POT1 disrupts telomeric G-quadruplexes allowing telomerase extension in vitro Journal Article
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Human immunodeficiency virus nucleocapsid protein accelerates strand transfer of the terminally redundant sequences involved in reverse transcription. Journal Article
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IMPROVED FREE-ENERGY PARAMETERS FOR PREDICTIONS OF RNA DUPLEX STABILITY Journal Article
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IMPROVED MEASUREMENT OF C-13, P-31 J-COUPLING-CONSTANTS IN ISOTOPICALLY LABELED RNA Journal Article
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IN-VITRO ANALYSIS OF TRANSLATIONAL RATE AND ACCURACY WITH AN UNMODIFIED TRANSFER-RNA Journal Article
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IN-VITRO SELECTION OF RNA LIGANDS TO SUBSTANCE-P Journal Article
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IN-VITRO SELECTION OF SMALL RNAS THAT BIND TO ESCHERICHIA-COLI PHENYLALANYL-TRANSFER-RNA SYNTHETASE Journal Article
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INFLUENCE OF MESSENGER-RNA DETERMINANTS ON TRANSLATION INITIATION IN ESCHERICHIA-COLI Journal Article
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INHIBITION OF TELOMERASE BY G-QUARTET DNA STRUCTURES Journal Article
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INHIBITION OF THE HAMMERHEAD RIBOZYME BY NEOMYCIN Journal Article
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INVITRO EVOLUTION OF INTRINSICALLY BENT DNA Journal Article
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INVITRO SELECTION OF RNAS THAT UNDERGO AUTOLYTIC CLEAVAGE WITH PB2+ Journal Article
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IRON(II)-ETHYLENEDIAMINETETRAACETIC ACID-CATALYZED CLEAVAGE OF RNA AND DNA OLIGONUCLEOTIDES - SIMILAR REACTIVITY TOWARD SINGLE-STRANDED AND DOUBLE-STRANDED FORMS Journal Article
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ISOLATION OF HIGH-AFFINITY RNA LIGANDS TO HIV-1 INTEGRASE FROM A RANDOM POOL Journal Article
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Identification of thermodynamically relevant interactions between EF-Tu and backbone elements of tRNA Journal Article
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Idiosyncratic tuning of tRNAs to achieve uniform ribosome binding. Journal Article
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Imaging DNA Equilibrated onto Mica in Liquid Using Biochemically Relevant Deposition Conditions Journal Article
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Imino proton exchange rates imply an induced-fit binding mechanism for the VEGF(165)-targeting aptamer, Macugen Journal Article
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Improved distance analysis in RNA using network-editing techniques for overcoming errors due to spin diffusion Journal Article
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Improved estimation of secondary structure in ribonucleic acids. Journal Article
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Improved native affinity purification of RNA Journal Article
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In vitro selection of DNAs with an increased propensity to form small circles. Journal Article
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In vitro selection of RNA specifically cleaved by bacteriophage T4 RegB endonuclease Journal Article
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In vitro selection of RNAs that undergo autolytic cleavage with Pb2+. Journal Article
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In vitro selection of RNAs with increased tertiary structure stability Journal Article
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In vitro selection of a novel catalytic RNA: Characterization of a sulfur alkylation reaction and interaction with a small peptide Journal Article
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In vitro selection of phosphorothiolated aptamers Journal Article
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In vitro selection of the Naegleria GIR1 ribozyme identifies three base changes that dramatically improve activity Journal Article
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Incorporating residual dipolar couplings into the NMR solution structure determination of nucleic acids Journal Article
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Influence of hydrostatic pressure and cosolutes on RNA tertiary structure Journal Article
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Inhibition of the hammerhead ribozyme cleavage reaction by site-specific binding of Tb(III) Journal Article
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Inhibitory RNA ligand to reverse transcriptase from feline immunodeficiency virus Journal Article
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Insights into the Regulatory Landscape of the Lysine Riboswitch Journal Article
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Interaction of Escherichia coli DbpA with 23S rRNA in different functional states of the enzyme. Journal Article
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Interaction of R17 coat protein with its RNA binding site for translational repression. Journal Article
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Interaction of R17 coat protein with synthetic variants of its ribonucleic acid binding site. Journal Article
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Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA .1. Defining the minimal RNA site Journal Article
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Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA .2. Specificity determinants of RNA-protein recognition Journal Article
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Interactions of Escherichia coli RNA with bacteriophage MS2 coat protein: genomic SELEX Journal Article
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Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA Journal Article
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Internal equilibrium of the hammerhead ribozyme is altered by the length of certain covalent cross-links Journal Article
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Involvement of a specific metal ion in the transition of the hammerhead ribozyme to its catalytic conformation Journal Article
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Joining the two domains of a group I ribozyme to form the catalytic core Journal Article
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KEEPING RNA HAPPY Journal Article
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KINETIC CHARACTERIZATION OF INTRAMOLECULAR AND INTERMOLECULAR HAMMERHEAD RNAS WITH STEM-II DELETIONS Journal Article
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KINETICS OF INTERMOLECULAR CLEAVAGE BY HAMMERHEAD RIBOZYMES Journal Article
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Kinetic and secondary structure analysis of Naegleria andersoni GIR1, a group I ribozyme whose putative biological function is site-specific hydrolysis Journal Article
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Kinetic characterization of two I/II format hammerhead ribozymes Journal Article
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Kinetic pathway for folding of the Tetrahymena ribozyme revealed by three UV-inducible crosslinks Journal Article
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LEAD-CATALYZED CLEAVAGE OF YEAST TRANSFER RNAPHE MUTANTS Journal Article
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LIMITED SAMPLING OF CONFORMATIONAL SPACE BY THE DISTANCE GEOMETRY ALGORITHM - IMPLICATIONS FOR STRUCTURES GENERATED FROM NMR DATA Journal Article
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LOCALIZATION OF TRANSCRIBED REGIONS ON EXTRACHROMOSOMAL RIBOSOMAL-RNA GENES OF TETRAHYMENA-THERMOPHILA BY R-LOOP MAPPING Journal Article
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Less isn't always more. Journal Article
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Ligand-dependent folding of the three-way junction in the purine riboswitch Journal Article
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Liquid crystal alignment on a chiral surface: Interfacial interaction with sheared DNA films Journal Article
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Liquid crystal self-assembly of random-sequence DNA oligomers Journal Article
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Local RNA structural changes induced by crystallization are revealed by SHAPE Journal Article
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Long Noncoding RNAs: Molecular Modalities to Organismal Functions Journal Article
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Longitudinal-Relaxation-Enhanced NMR Experiments for the Study of Nucleic Acids in Solution Journal Article
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MECHANISM OF RECOGNITION OF THE 5' SPLICE SITE IN SELF-SPLICING GROUP-I INTRONS Journal Article
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MINOR-GROOVE RECOGNITION OF THE CONSERVED G-CENTER-DOT-U PAIR AT THE TETRAHYMENA RIBOZYME REACTION SITE Journal Article
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MONO-VALENT CATION INDUCED STRUCTURE OF TELOMERIC DNA - THE G-QUARTET MODEL Journal Article
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MOVEMENT OF THE GUIDE SEQUENCE DURING RNA CATALYSIS BY A GROUP-I RIBOZYME Journal Article
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MUTANTS OF THE BACTERIOPHAGE-MS2 COAT PROTEIN THAT ALTER ITS COOPERATIVE BINDING TO RNA Journal Article
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MUTATIONS AFFECTING TRANSLATION OF THE BACTERIOPHAGE-T4 RIIB GENE CLONED IN ESCHERICHIA-COLI Journal Article
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MUTATIONS AT THE GUANOSINE-BINDING SITE OF THE TETRAHYMENA RIBOZYME ALSO AFFECT SITE-SPECIFIC HYDROLYSIS Journal Article
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MUTATIONS IN A NONCONSERVED SEQUENCE OF THE TETRAHYMENA RIBOZYME INCREASE ACTIVITY AND SPECIFICITY Journal Article
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Mapping contacts between Escherichia coli alanyl tRNA synthetase and 2 ' hydroxyls using a complete tRNA molecule Journal Article
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Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA Journal Article
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Mechanistic Insights into Cofactor-Dependent Coupling of RNA Folding and mRNA Transcription/Translation by a Cobalamin Riboswitch Journal Article
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Mediator and cohesin connect gene expression and chromatin architecture Journal Article
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Messenger RNA enrichment using synthetic oligo(T) click nucleic acids Journal Article
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Metal Ion-Mediated Nucleobase Recognition by the ZTP Riboswitch Journal Article
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Metal ion dependence, thermodynamics, and kinetics for intramolecular docking of a GAAA tetraloop and receptor connected by a flexible linker Journal Article
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Metal ion specificities for folding and cleavage activity in the Schistosoma hammerhead ribozyme Journal Article
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Minimal and extended hammerheads utilize a similar dynamic reaction mechanism for catalysis. Journal Article
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Minor-groove recognition of double-stranded RNA by the double-stranded RNA-binding domain from the RNA-activated protein kinase PKR Journal Article
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Mitochondrial import of only one of three nuclear-encoded glutamine tRNAs in Tetrahymena thermophila Journal Article
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Modeling Spatial Correlation of DNA Deformation: DNA Allostery in Protein Binding Journal Article
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Modified pyrimidines specifically bind the purine riboswitch Journal Article
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Modifying the specificity of an RNA backbone contact Journal Article
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Molecular basis of transcription initiation in Archaea Journal Article
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Molecular interactions and metal binding in the theophylline-binding core of an RNA aptamer Journal Article
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Molecular sensing by the aptamer domain of the FMN riboswitch: a general model for ligand binding by conformational selection Journal Article
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Monitoring RNA-ligand interactions using isothermal titration calorimetry. Journal Article
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Monitoring post-translational modification of proteins with allosteric ribozymes Journal Article
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Multidimensional heteronuclear NMR experiments for structure determination of isotopically labeled RNA Journal Article
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Multiple folding pathways for the P4-P6 RNA domain Journal Article
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Mutagenesis and comparative sequence analysis of a base triple joining the two domains of group I ribozymes Journal Article
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Mutational analysis of the purine riboswitch aptamer domain Journal Article
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Mutations in the Tetrahymena ribozyme internal guide sequence: Effects on docking of the P1 helix into the catalytic core and correlation with catalytic activity Journal Article
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NATURE OF THE RIBOSOMAL MESSENGER-RNA TRACK - ANALYSIS OF RIBOSOME-BINDING SITES CONTAINING DIFFERENT SEQUENCES AND SECONDARY STRUCTURES Journal Article
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NEOMYCIN INHIBITION OF THE HAMMERHEAD RIBOZYME INVOLVES IONIC INTERACTIONS Journal Article
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NMR Chemical Exchange as a Probe for Ligand-Binding Kinetics in a Theophylline-Binding RNA Aptamer Journal Article
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NMR methods for studying the structure and dynamics of RNA Journal Article
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NMR solution structure determination of RNAs Journal Article
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NMR solution structure of the lead-dependent ribozyme: Evidence for dynamics in RNA catalysis Journal Article
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NUCLEAR-MAGNETIC-RESONANCE STUDIES OF THE HAMMERHEAD RIBOZYME DOMAIN - SECONDARY STRUCTURE FORMATION AND MAGNESIUM-ION DEPENDENCE Journal Article
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NUCLEIC-ACID STRUCTURE - TETRALOOPS AND RNA FOLDING Journal Article
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NUCLEOTIDES IN YEAST TRANSFER RNAPHE REQUIRED FOR THE SPECIFIC RECOGNITION BY ITS COGNATE SYNTHETASE Journal Article
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NUMBERING SYSTEM FOR THE HAMMERHEAD Journal Article
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Natural and artificial RNAs occupy the same restricted region of sequence space Journal Article
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Non-coding-RNA regulators of RNA polymerase II transcription Journal Article
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Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes Journal Article
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Novel Ligands for a Purine Riboswitch Discovered by RNA-Ligand Docking Journal Article
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Novel methods of generating specific oligonucleotide inhibitors of viral polymerases Journal Article
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Nucleoprotein photo-cross-linking using halopyrimidine-substituted RNAs Journal Article
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Nucleosome core particles containing a poly(dA center dot dT) sequence element exhibit a locally distorted DNA structure Journal Article
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Nucleosomes in solution exist as a mixture of twist-defect states Journal Article
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Nucleotides Adjacent to the Ligand-Binding Pocket are Linked to Activity Tuning in the Purine Riboswitch Journal Article
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OLIGOMERIZATION OF INTERVENING SEQUENCE RNA MOLECULES IN THE ABSENCE OF PROTEINS Journal Article
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ONE BINDING-SITE DETERMINES SEQUENCE SPECIFICITY OF TETRAHYMENA PRE-RIBOSOMAL-RNA SELF-SPLICING, TRANSSPLICING, AND RNA ENZYME-ACTIVITY Journal Article
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ORGANIZATION OF HIGHLY REPEATED SEQUENCES IN MOUSE MAIN-BAND DNA Journal Article
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Oligodeoxynucleotides containing 2 '-amino-LNA nucleotides as constrained morpholino phosphoramidate and phosphorodiamidate monomers Journal Article
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Oligonucleotide binding to the native and denatured conformers of yeast transfer RNA-3 Lea. Journal Article
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On the molecular mechanism of drug intercalation into DNA: A simulation study of the intercalation pathway, free energy, and DNA structural changes Journal Article
-
On the occasion of the 25(th) anniversary of the discovery of catalytic RNA Journal Article
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Opening of nucleic-acid double strands by helicases:: Active versus passive opening -: art. no. 011904 Journal Article
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Optimizing bead size reduces errors in force measurements in optical traps Journal Article
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Order, dynamics and metal-binding in the lead-dependent ribozyme Journal Article
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P-31 CHEMICAL-SHIFT AS A PROBE OF STRUCTURAL MOTIFS IN RNA Journal Article
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PARTIAL DENATURATION OF MOUSE DNA IN PREPARATIVE CSCL DENSITY GRADIENTS AT ALKALINE PH Journal Article
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PHOTO-CROSS-LINKING OF 5-IODOURACIL SUBSTITUTED RNA AND DNA TO PROTEINS Journal Article
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PMR or the self-complementary oligoribonucleotide CpCpGpG. Journal Article
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POLYMER-SUPPORTED RNA-SYNTHESIS AND ITS APPLICATION TO TEST THE NEAREST-NEIGHBOR MODEL FOR DUPLEX STABILITY Journal Article
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PREPARATION OF ISOTOPICALLY LABELED RIBONUCLEOTIDES FOR MULTIDIMENSIONAL NMR-SPECTROSCOPY OF RNA Journal Article
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PROPERTIES OF AN IN-VITRO SELECTED PB2+ CLEAVAGE MOTIF Journal Article
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PROTEIN FACILITATION OF GROUP-I INTRON SPLICING BY ASSEMBLY OF THE CATALYTIC CORE AND THE 5'-SPLICE-SITE DOMAIN Journal Article
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PROTON NMR AND STRUCTURAL FEATURES OF A 24-NUCLEOTIDE RNA HAIRPIN Journal Article
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Peptidyl-transferase ribozymes: trans reactions, structural characterization and ribosomal RNA-like features Journal Article
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Pf1 filamentous phage as an alignment tool for generating local and global structural information in nucleic acids Journal Article
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Photoaffinity cross-linking and RNA structure analysis Journal Article
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Phylogenetic analysis of the structure of RNase MRP RNA in yeasts Journal Article
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Phylogenetic-comparative analysis of the eukaryal ribonuclease P RNA Journal Article
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Polycomb-mediated genome architecture enables long-range spreading of H3K27 methylation Journal Article
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Preparation of Group I Introns for Biochemical Studies and Crystallization Assays by Native Affinity Purification Journal Article
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Probing in Real Time the Soft Crystallization of DNA-Capped Nanoparticles Journal Article
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Probing of metal-binding domains of RNA hairpin loops by laser-induced lanthanide(III) luminescence Journal Article
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Probing the binding of Tb(III) and Eu(III) to the hammerhead ribozyme using luminescence spectroscopy Journal Article
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Proteins for packaging, partitioning, processing, and proofing of nucleic acids Journal Article
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Purification of telomerase from Euplotes aediculatus: Requirement of a primer 3' overhang Journal Article
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Quantifying the energetic interplay of RNA tertiary and secondary structure interactions Journal Article
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Quantitation of free energy profiles in RNA-ligand interactions by nucleotide analog interference mapping Journal Article
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Quantitative analysis of deoxynucleotide substitutions in the codon-anticodon helix. Journal Article
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Quantitative assessment of EF-1α•GTP binding to aminoacyl-tRNAs, aminoacyl-viral RNA, and tRNA shows close correspondence to the RNA binding properties of EF-Tu Journal Article
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RECOGNITION NUCLEOTIDES FOR HUMAN PHENYLALANYL-TRANSFER RNA-SYNTHETASE Journal Article
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RECOGNITION OF TERTIARY STRUCTURE IN TRANSFER-RNAS BY RH(PHEN)2PHI3+, A NEW REAGENT FOR RNA STRUCTURE-FUNCTION MAPPING Journal Article
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RELATIVE ORIENTATION OF RNA HELICES IN A GROUP-I RIBOZYME DETERMINED BY HELIX EXTENSION ELECTRON-MICROSCOPY Journal Article
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RELAXATION OF A SINGLE DNA MOLECULE OBSERVED BY OPTICAL MICROSCOPY Journal Article
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REPLACEMENT OF RNA HAIRPINS BY INVITRO SELECTED TETRANUCLEOTIDES Journal Article
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REPRESENTATION OF THE SECONDARY AND TERTIARY STRUCTURE OF GROUP-I INTRONS Journal Article
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RIBOZYME RECOGNITION OF RNA BY TERTIARY INTERACTIONS WITH SPECIFIC RIBOSE 2'-OH GROUPS Journal Article
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RIBOZYME REVEALED Journal Article
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RIBOZYMES - HAMMERHEAD NAILED DOWN Journal Article
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RNA CATALYSIS BY A GROUP-I RIBOZYME - DEVELOPING A MODEL FOR TRANSITION-STATE STABILIZATION Journal Article
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RNA LIGANDS TO HUMAN NERVE GROWTH-FACTOR Journal Article
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RNA PSEUDOKNOTS THAT INHIBIT HUMAN-IMMUNODEFICIENCY-VIRUS TYPE-1 REVERSE-TRANSCRIPTASE Journal Article
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RNA Polymerase II and TAFs Undergo a Slow Isomerization after the Polymerase Is Recruited to Promoter-Bound TFIID Journal Article
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RNA SUBSTRATE BINDING-SITE IN THE CATALYTIC CORE OF THE TETRAHYMENA RIBOZYME Journal Article
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RNA aptamers as pathway-specific MAP kinase inhibitors Journal Article
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RNA aptamers to the adenosine moiety of S-adenosyl methionine: structural inferences from variations on a theme and the reproducibility of SELEX Journal Article
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RNA aptamers to the peptidyl transferase inhibitor chloramphenicol Journal Article
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RNA as a flexible scaffold for proteins: Yeast telomerase and beyond Journal Article
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RNA polymerase II acts as an RNA-dependent RNA polymerase to extend and destabilize a non-coding RNA Journal Article
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RNA recognition by the DNA end-binding Ku heterodimer Journal Article
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RNA structure comes of age Journal Article
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RNA tertiary folding monitored by fluorescence of covalently attached pyrene Journal Article
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RNA tertiary structure mediation by adenosine platforms Journal Article
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RNA-BINDING PROPERTIES OF THE COAT PROTEIN FROM BACTERIOPHAGE GA Journal Article
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RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Journal Article
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RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers Journal Article
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RNase P: interface of the RNA and protein worlds Journal Article
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ROLE OF A BULGED-A RESIDUE IN A SPECIFIC RNA PROTEIN-INTERACTION Journal Article
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ROLE OF CONSERVED SEQUENCE ELEMENT-9L AND ELEMENT-2 IN SELF-SPLICING OF THE TETRAHYMENA RIBOSOMAL-RNA PRECURSOR Journal Article
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ROLE OF THE TERTIARY NUCLEOTIDES IN THE INTERACTION OF YEAST PHENYLALANINE TRANSFER-RNA WITH ITS COGNATE SYNTHETASE Journal Article
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Rapid and Simple Ribozymic Aminoacylation Using Three Conserved Nucleotides Journal Article
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Recognition and cleavage of primary microRNA precursors by the nuclear processing enzyme Drosha Journal Article
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Recognition of S-adenosylmethionine by riboswitches Journal Article
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Recurrent RNA motifs as scaffolds for genetically encodable small-molecule biosensors Journal Article
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Refined solution structure of the iron-responsive element RNA using residual dipolar couplings Journal Article
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Refinement of local and long-range structural order in theophylline-binding RNA using C-13-H-1 residual dipolar couplings and restrained molecular dynamics Journal Article
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Reflections on mirrors Journal Article
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Replacement of histone H3 with CENP-A directs global nucleosome array condensation and loosening of nucleosome superhelical termini Journal Article
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Requirements for efficient ligand-gated co-transcriptional switching in designed variants of the B. subtilis pbuE adenine-responsive riboswitch in E. coli Journal Article
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Resolution-enhanced base-type-edited HCN experiment for RNA Journal Article
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Riboswitches: Fold and function Journal Article
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Riboswitches: Structures and Mechanisms Journal Article
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Riboswitches: natural SELEXion Journal Article
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Riboswitches: still a lot of undiscovered country Journal Article
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Ribozymes, the first 20 years Journal Article
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Right-handed double-helix ultrashort DNA yields chiral nematic phases with both right- and left-handed director twist Journal Article
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Role of a heterogeneous free state in the formation of a specific RNA-theophylline complex Journal Article
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Role of the core DNA polymerase III subunits at the replication fork. Alpha is the only subunit required for processive replication. Journal Article
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SECONDARY STRUCTURE OF THE CIRCULAR FORM OF THE TETRAHYMENA RIBOSOMAL-RNA INTERVENING SEQUENCE - A TECHNIQUE FOR RNA STRUCTURE-ANALYSIS USING CHEMICAL PROBES AND REVERSE-TRANSCRIPTASE Journal Article
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SECONDARY STRUCTURE OF THE TETRAHYMENA RIBOSOMAL-RNA INTERVENING SEQUENCE - STRUCTURAL HOMOLOGY WITH FUNGAL MITOCHONDRIAL INTERVENING SEQUENCES Journal Article
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SELECTION AND CHARACTERIZATION OF RNAS REPLICATED BY Q-BETA REPLICASE Journal Article
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SELECTION FOR ACTIVE ESCHERICHIA-COLI TRANSFER RNA(PHE) VARIANTS FROM A RANDOMIZED LIBRARY USING 2 PROTEINS Journal Article
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SELECTION OF AN RNA MOLECULE THAT MIMICS A MAJOR AUTOANTIGENIC EPITOPE OF HUMAN INSULIN-RECEPTOR Journal Article
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SELECTION OF CIRCULARIZATION SITES IN A GROUP-1 IVS RNA REQUIRES MULTIPLE ALIGNMENTS OF AN INTERNAL TEMPLATE-LIKE SEQUENCE Journal Article
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SELECTION OF HIGH-AFFINITY RNA LIGANDS TO REVERSE-TRANSCRIPTASE - INHIBITION OF CDNA SYNTHESIS AND RNASE-H ACTIVITY Journal Article
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SELECTION OF HIGH-AFFINITY RNA LIGANDS TO THE BACTERIOPHAGE-R17 COAT PROTEIN Journal Article
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SELECTION OF THE INITIATOR TRANSFER-RNA BY ESCHERICHIA-COLI INITIATION-FACTORS Journal Article
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SELECTIVE ENRICHMENT OF RNA SPECIES FOR TIGHT-BINDING TO ESCHERICHIA-COLI RHO-FACTOR Journal Article
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SELEXION - SYSTEMATIC EVOLUTION OF LIGANDS BY EXPONENTIAL ENRICHMENT WITH INTEGRATED OPTIMIZATION BY NONLINEAR-ANALYSIS Journal Article
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SELF-ASSEMBLY OF A GROUP-I INTRON ACTIVE-SITE FROM ITS COMPONENT TERTIARY STRUCTURAL DOMAINS Journal Article
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SELF-CATALYZED CYCLIZATION OF THE INTERVENING SEQUENCE RNA OF TETRAHYMENA - INHIBITION BY METHIDIUMPROPYL.EDTA AND LOCALIZATION OF THE MAJOR DYE BINDING-SITES Journal Article
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SELF-CLEAVING CATALYTIC RNA Journal Article
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SELF-SPLICING AND ENZYMATIC CLEAVAGE OF RNA BY A GROUP-I INTERVENING SEQUENCE Journal Article
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SELF-SPLICING AND ENZYMATIC-ACTIVITY OF AN INTERVENING SEQUENCE RNA FROM TETRAHYMENA Journal Article
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SELF-SPLICING OF THE GROUP-I INTRON FROM ANABAENA PRE-TRANSFER-RNA - REQUIREMENT FOR BASE-PAIRING OF THE EXONS IN THE ANTICODON STEM Journal Article
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SELF-SPLICING RNA - IMPLICATIONS FOR EVOLUTION Journal Article
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SEQUENCE REQUIREMENTS FOR SELF-SPLICING OF THE TETRAHYMENA-THERMOPHILA PRE-RIBOSOMAL RNA Journal Article
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SEQUENCE REQUIREMENTS OF THE HAMMERHEAD RNA SELF-CLEAVAGE REACTION Journal Article
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SEQUENCE-DEPENDENT STRUCTURAL VARIATIONS OF HAMMERHEAD RNA ENZYMES Journal Article
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SITES OF CIRCULARIZATION OF THE TETRAHYMENA RIBOSOMAL-RNA IVS ARE DETERMINED BY SEQUENCE AND INFLUENCED BY POSITION AND SECONDARY STRUCTURE Journal Article
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SOLUTION STRUCTURE OF THE CUUG HAIRPIN LOOP - A NOVEL RNA TETRALOOP MOTIF Journal Article
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SPECIFIC INTERACTION BETWEEN RNA PHAGE COAT PROTEINS AND RNA Journal Article
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SPECIFIC RNA-BINDING BY Q-BETA COAT PROTEIN Journal Article
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STABILITY OF XGCGCP, GCGCYP, AND XGCGCYP HELIXES - AN EMPIRICAL ESTIMATE OF THE ENERGETICS OF HYDROGEN-BONDS IN NUCLEIC-ACIDS Journal Article
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STIMULATION OF INVITRO TRANSLATION OF MESSENGER-RNA BY ACTINOMYCIN-D AND CORDYCEPIN Journal Article
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STRATEGIES IN RNA CRYSTALLOGRAPHY Journal Article
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STRETCHING OF A SINGLE TETHERED POLYMER IN A UNIFORM-FLOW Journal Article
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STRUCTURAL BIOLOGY Lariat lessons Journal Article
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STRUCTURAL CONVENTIONS FOR GROUP-I INTRONS Journal Article
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STRUCTURAL FEATURES THAT GIVE RISE TO THE UNUSUAL STABILITY OF RNA HAIRPINS CONTAINING GNRA LOOPS Journal Article
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STRUCTURE OF AN UNMODIFIED TRANSFER-RNA MOLECULE Journal Article
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STRUCTURES INVOLVED IN TETRAHYMENA RIBOSOMAL-RNA SELF-SPLICING AND RNA ENZYME-ACTIVITY Journal Article
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STUDIES ON GENE-CONTROL REGIONS .10. EFFECT OF SPECIFIC ADENINE-THYMINE TRANSVERSIONS ON THE LAC REPRESSOR-LAC OPERATOR INTERACTION Journal Article
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STUDIES ON THE HAMMERHEAD RNA SELF-CLEAVING DOMAIN Journal Article
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SUBSTRATE SEQUENCE EFFECTS ON HAMMERHEAD RNA CATALYTIC EFFICIENCY Journal Article
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SYSTEMATIC EVOLUTION OF LIGANDS BY EXPONENTIAL ENRICHMENT - RNA LIGANDS TO BACTERIOPHAGE-T4 DNA-POLYMERASE Journal Article
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Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF). Journal Article
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Selecting apt RNAs for NMR Journal Article
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Selection and Characterization of a DNA Aptamer That Can Discriminate between cJun/cJun and cJun/cFos Journal Article
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Selective binding of Escherichia coli RNA polymerase to topoisomers of minicircles carrying the TAC16 and TAC17 promoters. Journal Article
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Self-splicing and enzymatic activity of an intervening sequence RNA from Tetrahymena Journal Article
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Self-splicing of group I introns. Journal Article
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Self-splicing of the Tetrahymena intron from mRNA in mammalian cells Journal Article
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Sequence-dependent nanometer-scale conformational dynamics of individual RecBCD-DNA complexes Journal Article
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Sequence-specific interaction of R17 coat protein with its ribonucleic acid binding site. Journal Article
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Sequence-specific recognition of DNA in the nucleosome by pyrrole-imidazole polyamides Journal Article
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Sequestering of Eu(III) by a GAAA RNA tetraloop Journal Article
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Silver Nanoassemblies Constructed from Boranephosphonate DNA Journal Article
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Single molecule studies reveal that p53 tetramers dynamically bind response elements containing one or two half sites Journal Article
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Single polymer dynamics in an elongational flow Journal Article
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Single-Molecule Fluorescence Resonance Energy Transfer Shows Uniformity in TATA Binding Protein-Induced DNA Bending and Heterogeneity in Bending Kinetics Journal Article
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Single-Molecule Studies of the Lysine Riboswitch Reveal Effector-Dependent Conformational Dynamics of the Aptamer Domain Journal Article
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Single-molecule kinetic studies of DNA hybridization under extreme pressures Journal Article
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Small molecule regulated sgRNAs enable control of genome editing in E. coli by Cas9 Journal Article
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Soaking Hexammine Cations into RNA Crystals to Obtain Derivatives for Phasing Diffraction Data Journal Article
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Solution structure of RNase P RNA Journal Article
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Solution structure of tRNA(Val) from refinement of homology model against residual dipolar coupling and SAXS data Journal Article
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Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: determinants of affinity and sequence specificity. Journal Article
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Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution Journal Article
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Specific replacement of functional groups of uridine-33 in yeast phenylalanine transfer ribonucleic acid. Journal Article
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Specificity of hammerhead ribozyme cleavage Journal Article
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Stability of RNA hairpin loops: A 6 -C m -U 6 . Journal Article
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Stability of ribonucleic acid double-stranded helices. Journal Article
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Steric interference modification of the hammerhead ribozyme Journal Article
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Structural and Biophysical Studies of Human PARP-1 in Complex with Damaged DNA Journal Article
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Structural and energetic analysis of RNA recognition by a universally conserved protein from the signal recognition particle Journal Article
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Structural basis for 2′-deoxyguanosine recognition by the 2′-dG-II class of riboswitches Journal Article
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Structural basis for diversity in the SAM clan of riboswitches Journal Article
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Structural basis for recognition of S-adenosylhomocysteine by riboswitches Journal Article
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Structural basis for telomeric single-stranded DNA recognition by yeast Cdc13 Journal Article
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Structural basis of the enhanced stability of a mutant ribozyme domain and a detailed view of RNA-solvent interactions Journal Article
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Structural determinants for generating centromeric chromatin Journal Article
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Structural implications of novel diversity in eucaryal RNase P RNA Journal Article
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Structural studies of catalytic RNAs by heteronuclear multi-dimensional NMR. Journal Article
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Structural studies of the purine and SAM binding riboswitches Journal Article
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Structural variation induced by different nucleotides at the cleavage site of the hammerhead ribozyme Journal Article
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Structure and dynamics of liquid crystalline pattern formation in drying droplets of DNA Journal Article
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Structure and dynamics of nucleosomal DNA Journal Article
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Structure and dynamics of the iron responsive element RNA: Implications for binding of the RNA by iron regulatory binding proteins Journal Article
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Structure and function of eukaryotic ribonuclease P RNA Journal Article
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Structure and mechanism of purine-binding riboswitches Journal Article
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Structure and mechanism of the hammerhead self-cleaving domain. Journal Article
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Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine Journal Article
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Structure of human POT1 bound to telomeric single-stranded DNA provides a model for chromosome end-protection Journal Article
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Structure of the S-adenosylmethionine riboswitch regulatory mRNA element Journal Article
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Structure of the Tetrahymena ribozyme:: Base triple sandwich and metal ion at the active site Journal Article
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Structure-guided Mutational Analysis of Gene Regulation by the Bacillus subtilis pbuE Adenine-responsive Riboswitch in a Cellular Context Journal Article
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Suppression of eukaryotic translation termination by selected RNAs Journal Article
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Surface-Mediated DNA Hybridization: Effects of DNA Conformation, Surface Chemistry, and Electrostatics Journal Article
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Synonymous mutations make dramatic contributions to fitness when growth is limited by a weak-link enzyme Journal Article
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Synthesis and applications of RNAs with position-selective labelling and mosaic composition Journal Article
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TELOMERASE RNAS OF DIFFERENT CILIATES HAVE A COMMON SECONDARY STRUCTURE AND A PERMUTED TEMPLATE Journal Article
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TEMPLATE RECOGNITION BY AN RNA-DEPENDENT RNA-POLYMERASE - IDENTIFICATION AND CHARACTERIZATION OF 2 RNA-BINDING SITES ON Q-BETA REPLICASE Journal Article
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TERTIARY INTERACTIONS WITH THE INTERNAL GUIDE SEQUENCE MEDIATE DOCKING OF THE P1 HELIX INTO THE CATALYTIC CORE OF THE TETRAHYMENA RIBOZYME Journal Article
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TERTIARY STRUCTURE AROUND THE GUANOSINE-BINDING SITE OF THE TETRAHYMENA RIBOZYME Journal Article
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TFIIA changes the conformation of the DNA in TBP/TATA complexes and increases their kinetic stability Journal Article
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TFIIF Facilitates Dissociation of RNA Polymerase II from Noncoding RNAs That Lack a Repression Domain Journal Article
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THE BACTERIOPHAGE-T4 REGA GENE - PRIMARY SEQUENCE OF A TRANSLATIONAL REPRESSOR Journal Article
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THE EFFECT OF BASE MISMATCHES IN THE SUBSTRATE RECOGNITION HELICES OF HAMMERHEAD RIBOZYMES ON BINDING AND CATALYSIS Journal Article
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THE IMPORTANCE OF BEING RIBOSE AT THE CLEAVAGE SITE IN THE TETRAHYMENA RIBOZYME REACTION Journal Article
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THE INTERVENING SEQUENCE OF THE RIBOSOMAL-RNA PRECURSOR IS CONVERTED TO A CIRCULAR RNA IN ISOLATED-NUCLEI OF TETRAHYMENA Journal Article
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THE PHAGE-T4 NRDB INTRON - A DELETION MUTANT OF A VERSION FOUND IN THE WILD Journal Article
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THE ROLE OF 2'-HYDROXYL GROUPS IN AN RNA-PROTEIN INTERACTION Journal Article
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THE SELF-SPLICING RNA OF TETRAHYMENA IS TRAPPED IN A LESS ACTIVE CONFORMATION BY GEL PURIFICATION Journal Article
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THE TELOMERES OF THE LINEAR MITOCHONDRIAL-DNA OF TETRAHYMENA THERMOPHILA CONSIST OF 53-BP TANDEM REPEATS Journal Article
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THERMAL-STABILITY OF RNA HAIRPINS CONTAINING A 4-MEMBERED LOOP AND A BULGE NUCLEOTIDE Journal Article
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THIOPHOSPHATE INTERFERENCE EXPERIMENTS LOCATE PHOSPHATES IMPORTANT FOR THE HAMMERHEAD RNA SELF-CLEAVAGE REACTION Journal Article
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TRANSLATION INITIATION COMPLEX-FORMATION WITH 30-S RIBOSOMAL PARTICLES MUTATED AT CONSERVED POSITIONS IN THE 3'-MINOR DOMAIN OF 16-S RNA Journal Article
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TRANSLATIONAL INITIATION IN PROKARYOTES Journal Article
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TRANSLATIONAL REGULATION OF EXPRESSION OF THE BACTERIOPHAGE-T4 LYSOZYME GENE Journal Article
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TRANSLOCATION OF AN RNA DUPLEX ON A RIBOZYME Journal Article
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Targeting Riboswitches with Beta-Axial-Substituted Cobalamins Journal Article
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Targeting of Polycomb Repressive Complex 2 to RNA by Short Repeats of Consecutive Guanines Journal Article
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Telomerase and chromosome end maintenance Journal Article
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Tetrahymena Telomerase Protein p65 Induces Conformational Changes throughout Telomerase RNA (TER) and Rescues Telomerase Reverse Transcriptase and TER Assembly Mutants Journal Article
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The 12 Å structure of trypsin-treated measles virus N-RNA Journal Article
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The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23S rRNA Journal Article
-
The Euplotes La motif protein p43 has properties of a telomerase-specific subunit Journal Article
-
The BRCT domain of PARP1 binds intact DNA and mediates intrastrand transfer Journal Article
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The HIV plus-strand transfer reaction: determination of replication-competent intermediates and identification of a novel lentiviral element, the primer over-extension sequence. Journal Article
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The HMGB1 C-Terminal Tail Regulates DNA Bending Journal Article
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The I-Tetraplex building block: Rational design and controlled fabrication of robust 1D DNA scaffolds through non-Watson-Crick interactions Journal Article
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The POT1-TPP1 telomere complex is a telomerase processivity factor Journal Article
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The RNA accordion model for template positioning by telomerase RNA during telomeric DNA synthesis Journal Article
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The Structure of a Tetrahydrofolate-Sensing Riboswitch Reveals Two Ligand Binding Sites in a Single Aptamer Journal Article
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The affinity of elongation factor Tu for an aminoacyl-tRNA is modulated by the esterified amino acid. Journal Article
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The anchor site of telomerase from Euplotes aediculatus revealed by photo-cross-linking to single- and double-stranded DNA primers Journal Article
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The anticodon is the signal sequence for mitochondrial import of glutamine tRNA in Tetrahymena Journal Article
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The chemical repertoire of natural ribozymes Journal Article
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The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold. Journal Article
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The gamma subunit of DNA polymerase III holoenzyme of Escherichia coli is produced by ribosomal frameshifting. Journal Article
-
The global conformation of the hammerhead ribozyme determined using residual dipolar couplings Journal Article
-
The glucocorticoid receptor DNA-binding domain recognizes RNA hairpin structures with high affinity Journal Article
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The hammerhead ribozyme Conference Proceeding
-
The interface between Escherichia coli elongation factor Tu and aminoacyl-tRNA. Journal Article
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The landscape of eukaryotic mRNPs Journal Article
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The parallel universe of RNA folding Journal Article
-
The structure-function dilemma of the hammerhead ribozyme. Journal Article
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Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain Journal Article
-
Thermodynamic dissection of the substrate-ribozyme interaction in the hammerhead ribozyme Journal Article
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Thermodynamic stability of the P4-P6 domain RNA tertiary structure measured by temperature gradient gel electrophoresis Journal Article
-
Torque modulates nucleosome stability and facilitates H2A/H2B dimer loss Journal Article
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Toward predicting self-splicing and protein-facilitated splicing of group I introns Journal Article
-
Transcriptional organization of the Escherichia coli dnaX gene. Journal Article
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Transcriptional regulation: It takes a village Journal Article
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Translocation after synthesis of a four-nucleotide RNA commits RNA polymerase II to promoter escape Journal Article
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Triple resonance HNCCCH experiments for correlating exchangeable and nonexchangeable cytidine and uridine base protons in RNA Journal Article
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Triple-helix structure in telomerase RNA contributes to catalysis Journal Article
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Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions Journal Article
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Tuning the affinity of aminoacyl-tRNA to elongation factor Tu for optimal decoding. Journal Article
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Two major tertiary folding transitions of the Tetrahymena catalytic RNA. Journal Article
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Two-state model for helicase translocation and unwinding of nucleic acids Journal Article
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USING CIRCULAR PERMUTATION ANALYSIS TO REDEFINE THE R17 COAT PROTEIN-BINDING SITE Journal Article
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Ultrafast Dynamics Show That the Theophylline and 3-Methylxanthine Aptamers Employ a Conformational Capture Mechanism for Binding Their Ligands Journal Article
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Understanding the sequence specificity of tRNA binding to elongation factor Tu using tRNA mutagenesis. Journal Article
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Uniform binding of aminoacylated transfer RNAs to the ribosomal A and P sites. Journal Article
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Uridine-33 in yeast tRNA not essential for amber suppression. Journal Article
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Use of intrinsic binding energy for catalysis by an RNA enzyme Journal Article
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Using FRET to monitor protein-induced DNA bending: the TBP-TATA complex as a model system. Journal Article
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Using in vitro selection to direct the covalent attachment of human immunodeficiency virus type 1 Rev protein to high-affinity RNA ligands Journal Article
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VISUALIZATION OF A TERTIARY STRUCTURAL DOMAIN OF THE TETRAHYMENA GROUP-I INTRON BY ELECTRON-MICROSCOPY Journal Article
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VISUALIZING THE HIGHER-ORDER FOLDING OF A CATALYTIC RNA MOLECULE Journal Article
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When to believe what you see. Journal Article
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X-ray crystallography of large RNAs: Heavy-atom derivatives by RNA engineering Journal Article
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Yeast telomerase RNA: A flexible scaffold for protein subunits Journal Article
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YxiN is a modular protein combining a DEx(D/H) core and a specific RNA-binding domain. Journal Article
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tRNA conformity Journal Article
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